Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2887 and GFF2888 are separated by 60 nucleotides GFF2888 and GFF2889 overlap by 8 nucleotides GFF2889 and GFF2890 overlap by 4 nucleotides
GFF2887 - hypothetical protein, at 600,997 to 602,361
GFF2887
GFF2888 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 602,422 to 603,126
GFF2888
GFF2889 - Lipopolysaccharide export system ATP-binding protein LptB, at 603,119 to 603,943
GFF2889
GFF2890 - High-affinity branched-chain amino acid transport system permease protein LivH, at 603,940 to 604,989
GFF2890
Position (kb) 602
603
604 Strain fitness (log2 ratio) -2
-1
0
1
2 at 601.564 kb on + strand, within GFF2887 at 601.564 kb on + strand, within GFF2887 at 601.564 kb on + strand, within GFF2887 at 601.606 kb on + strand, within GFF2887 at 601.606 kb on + strand, within GFF2887 at 601.607 kb on - strand, within GFF2887 at 601.607 kb on - strand, within GFF2887 at 601.607 kb on - strand, within GFF2887 at 601.654 kb on + strand, within GFF2887 at 601.672 kb on + strand, within GFF2887 at 601.672 kb on + strand, within GFF2887 at 601.672 kb on + strand, within GFF2887 at 601.673 kb on - strand, within GFF2887 at 601.673 kb on - strand, within GFF2887 at 601.673 kb on - strand, within GFF2887 at 601.673 kb on - strand, within GFF2887 at 601.673 kb on - strand, within GFF2887 at 601.687 kb on + strand, within GFF2887 at 601.688 kb on - strand, within GFF2887 at 601.688 kb on - strand, within GFF2887 at 601.770 kb on - strand, within GFF2887 at 601.790 kb on - strand, within GFF2887 at 601.790 kb on - strand, within GFF2887 at 601.806 kb on + strand, within GFF2887 at 601.806 kb on + strand, within GFF2887 at 601.807 kb on - strand, within GFF2887 at 602.028 kb on + strand, within GFF2887 at 602.270 kb on - strand at 602.435 kb on + strand at 602.435 kb on + strand at 602.436 kb on - strand at 602.436 kb on - strand at 602.506 kb on + strand, within GFF2888 at 602.507 kb on - strand, within GFF2888 at 602.507 kb on - strand, within GFF2888 at 602.507 kb on - strand, within GFF2888 at 602.514 kb on - strand, within GFF2888 at 602.514 kb on - strand, within GFF2888 at 602.519 kb on + strand, within GFF2888 at 602.611 kb on - strand, within GFF2888 at 602.772 kb on + strand, within GFF2888 at 602.773 kb on - strand, within GFF2888 at 602.773 kb on - strand, within GFF2888 at 602.773 kb on - strand, within GFF2888 at 602.774 kb on + strand, within GFF2888 at 602.774 kb on + strand, within GFF2888 at 602.774 kb on + strand, within GFF2888 at 602.774 kb on + strand, within GFF2888 at 602.774 kb on + strand, within GFF2888 at 602.774 kb on + strand, within GFF2888 at 602.775 kb on - strand, within GFF2888 at 602.775 kb on - strand, within GFF2888 at 602.786 kb on + strand, within GFF2888 at 602.787 kb on - strand, within GFF2888 at 602.822 kb on + strand, within GFF2888 at 602.823 kb on - strand, within GFF2888 at 602.823 kb on - strand, within GFF2888 at 602.823 kb on - strand, within GFF2888 at 602.823 kb on - strand, within GFF2888 at 603.095 kb on + strand at 603.096 kb on - strand at 603.171 kb on + strand at 603.172 kb on - strand at 603.172 kb on - strand at 603.172 kb on - strand at 603.172 kb on - strand at 603.172 kb on - strand at 603.237 kb on + strand, within GFF2889 at 603.237 kb on + strand, within GFF2889 at 603.238 kb on - strand, within GFF2889 at 603.453 kb on + strand, within GFF2889 at 603.853 kb on + strand, within GFF2889
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 601,564 + GFF2887 0.42 -0.1 601,564 + GFF2887 0.42 -0.0 601,564 + GFF2887 0.42 +0.5 601,606 + GFF2887 0.45 -1.1 601,606 + GFF2887 0.45 +1.8 601,607 - GFF2887 0.45 -0.3 601,607 - GFF2887 0.45 -1.7 601,607 - GFF2887 0.45 -0.3 601,654 + GFF2887 0.48 -1.3 601,672 + GFF2887 0.49 -0.1 601,672 + GFF2887 0.49 +0.0 601,672 + GFF2887 0.49 +0.3 601,673 - GFF2887 0.50 +0.2 601,673 - GFF2887 0.50 -1.3 601,673 - GFF2887 0.50 -0.5 601,673 - GFF2887 0.50 -0.3 601,673 - GFF2887 0.50 +1.7 601,687 + GFF2887 0.51 -1.2 601,688 - GFF2887 0.51 -0.7 601,688 - GFF2887 0.51 +0.5 601,770 - GFF2887 0.57 -0.1 601,790 - GFF2887 0.58 -0.7 601,790 - GFF2887 0.58 +0.2 601,806 + GFF2887 0.59 -0.2 601,806 + GFF2887 0.59 -0.1 601,807 - GFF2887 0.59 -1.3 602,028 + GFF2887 0.76 +0.4 602,270 - -0.1 602,435 + +0.3 602,435 + +0.1 602,436 - -0.3 602,436 - +0.1 602,506 + GFF2888 0.12 +2.6 602,507 - GFF2888 0.12 +1.5 602,507 - GFF2888 0.12 -0.9 602,507 - GFF2888 0.12 +0.2 602,514 - GFF2888 0.13 -0.8 602,514 - GFF2888 0.13 +1.0 602,519 + GFF2888 0.14 +0.4 602,611 - GFF2888 0.27 -0.3 602,772 + GFF2888 0.50 -0.1 602,773 - GFF2888 0.50 -0.3 602,773 - GFF2888 0.50 +0.0 602,773 - GFF2888 0.50 +0.9 602,774 + GFF2888 0.50 -2.7 602,774 + GFF2888 0.50 +0.4 602,774 + GFF2888 0.50 +1.3 602,774 + GFF2888 0.50 -0.7 602,774 + GFF2888 0.50 -0.7 602,774 + GFF2888 0.50 -0.5 602,775 - GFF2888 0.50 -0.9 602,775 - GFF2888 0.50 -1.6 602,786 + GFF2888 0.52 -0.0 602,787 - GFF2888 0.52 +0.7 602,822 + GFF2888 0.57 +0.0 602,823 - GFF2888 0.57 -0.3 602,823 - GFF2888 0.57 +0.7 602,823 - GFF2888 0.57 -1.4 602,823 - GFF2888 0.57 -0.3 603,095 + -0.5 603,096 - +0.4 603,171 + +0.9 603,172 - -0.9 603,172 - -0.3 603,172 - -0.4 603,172 - -0.5 603,172 - +0.5 603,237 + GFF2889 0.14 +0.6 603,237 + GFF2889 0.14 +1.0 603,238 - GFF2889 0.14 +1.7 603,453 + GFF2889 0.40 -0.3 603,853 + GFF2889 0.89 +0.8
Or see this region's nucleotide sequence