Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2881 and GFF2882 are separated by 204 nucleotides GFF2882 and GFF2883 are separated by 143 nucleotides GFF2883 and GFF2884 are separated by 64 nucleotides GFF2884 and GFF2885 are separated by 137 nucleotides
GFF2881 - Cold shock protein CspA, at 597,510 to 597,719
GFF2881
GFF2882 - hypothetical protein, at 597,924 to 598,115
GFF2882
GFF2883 - hypothetical protein, at 598,259 to 598,630
GFF2883
GFF2884 - hypothetical protein, at 598,695 to 598,979
GFF2884
GFF2885 - hypothetical protein, at 599,117 to 599,932
GFF2885
Position (kb) 598
599 Strain fitness (log2 ratio) -1
0
1 at 597.713 kb on + strand at 597.799 kb on - strand at 597.860 kb on - strand at 597.860 kb on - strand at 597.868 kb on - strand at 597.915 kb on - strand at 597.925 kb on + strand at 597.993 kb on + strand, within GFF2882 at 598.001 kb on - strand, within GFF2882 at 598.094 kb on + strand, within GFF2882 at 598.095 kb on - strand, within GFF2882 at 598.126 kb on + strand at 598.212 kb on + strand at 598.212 kb on + strand at 598.217 kb on + strand at 598.289 kb on - strand at 598.522 kb on + strand, within GFF2883 at 598.523 kb on - strand, within GFF2883 at 598.523 kb on - strand, within GFF2883 at 598.527 kb on - strand, within GFF2883 at 598.553 kb on + strand, within GFF2883 at 598.553 kb on + strand, within GFF2883 at 598.553 kb on + strand, within GFF2883 at 598.554 kb on - strand, within GFF2883 at 598.554 kb on - strand, within GFF2883 at 598.554 kb on - strand, within GFF2883 at 598.554 kb on - strand, within GFF2883 at 598.554 kb on - strand, within GFF2883 at 598.626 kb on - strand at 598.984 kb on + strand at 599.070 kb on + strand at 599.146 kb on + strand at 599.272 kb on - strand, within GFF2885 at 599.272 kb on - strand, within GFF2885 at 599.289 kb on + strand, within GFF2885 at 599.289 kb on + strand, within GFF2885 at 599.314 kb on - strand, within GFF2885 at 599.356 kb on - strand, within GFF2885 at 599.356 kb on - strand, within GFF2885 at 599.367 kb on + strand, within GFF2885 at 599.367 kb on + strand, within GFF2885 at 599.367 kb on + strand, within GFF2885 at 599.368 kb on - strand, within GFF2885 at 599.448 kb on + strand, within GFF2885 at 599.448 kb on + strand, within GFF2885 at 599.448 kb on + strand, within GFF2885 at 599.448 kb on + strand, within GFF2885 at 599.449 kb on - strand, within GFF2885 at 599.487 kb on + strand, within GFF2885 at 599.487 kb on + strand, within GFF2885 at 599.488 kb on - strand, within GFF2885 at 599.604 kb on + strand, within GFF2885 at 599.604 kb on + strand, within GFF2885 at 599.605 kb on - strand, within GFF2885 at 599.784 kb on + strand, within GFF2885 at 599.811 kb on - strand, within GFF2885 at 599.927 kb on + strand at 599.927 kb on + strand at 599.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 597,713 + -0.2 597,799 - -1.7 597,860 - +0.1 597,860 - +0.0 597,868 - -0.4 597,915 - -1.1 597,925 + -0.2 597,993 + GFF2882 0.36 -0.8 598,001 - GFF2882 0.40 -1.5 598,094 + GFF2882 0.89 -0.2 598,095 - GFF2882 0.89 -0.5 598,126 + -0.2 598,212 + -0.2 598,212 + +0.1 598,217 + -0.7 598,289 - -0.5 598,522 + GFF2883 0.71 -0.1 598,523 - GFF2883 0.71 +1.0 598,523 - GFF2883 0.71 -1.4 598,527 - GFF2883 0.72 +0.4 598,553 + GFF2883 0.79 -0.1 598,553 + GFF2883 0.79 +0.8 598,553 + GFF2883 0.79 +0.9 598,554 - GFF2883 0.79 +0.2 598,554 - GFF2883 0.79 +0.4 598,554 - GFF2883 0.79 -0.8 598,554 - GFF2883 0.79 +0.5 598,554 - GFF2883 0.79 -0.3 598,626 - -1.0 598,984 + +0.1 599,070 + -0.5 599,146 + -1.6 599,272 - GFF2885 0.19 -0.2 599,272 - GFF2885 0.19 -0.7 599,289 + GFF2885 0.21 -1.3 599,289 + GFF2885 0.21 +0.8 599,314 - GFF2885 0.24 +0.1 599,356 - GFF2885 0.29 -0.4 599,356 - GFF2885 0.29 +0.1 599,367 + GFF2885 0.31 +0.3 599,367 + GFF2885 0.31 -0.1 599,367 + GFF2885 0.31 +0.8 599,368 - GFF2885 0.31 +1.3 599,448 + GFF2885 0.41 +0.6 599,448 + GFF2885 0.41 -0.2 599,448 + GFF2885 0.41 -1.1 599,448 + GFF2885 0.41 +0.1 599,449 - GFF2885 0.41 -0.0 599,487 + GFF2885 0.45 -0.5 599,487 + GFF2885 0.45 -1.0 599,488 - GFF2885 0.45 +0.5 599,604 + GFF2885 0.60 +0.5 599,604 + GFF2885 0.60 +1.0 599,605 - GFF2885 0.60 -0.1 599,784 + GFF2885 0.82 +0.6 599,811 - GFF2885 0.85 -0.2 599,927 + +0.6 599,927 + -0.4 599,927 + +0.2
Or see this region's nucleotide sequence