Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2879 and GFF2880 are separated by 287 nucleotides GFF2880 and GFF2881 are separated by 236 nucleotides GFF2881 and GFF2882 are separated by 204 nucleotides GFF2882 and GFF2883 are separated by 143 nucleotides
GFF2879 - hypothetical protein, at 596,186 to 596,860
GFF2879
GFF2880 - hypothetical protein, at 597,148 to 597,273
GFF2880
GFF2881 - Cold shock protein CspA, at 597,510 to 597,719
GFF2881
GFF2882 - hypothetical protein, at 597,924 to 598,115
GFF2882
GFF2883 - hypothetical protein, at 598,259 to 598,630
GFF2883
Position (kb) 597
598 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 596.442 kb on + strand, within GFF2879 at 596.487 kb on + strand, within GFF2879 at 596.488 kb on - strand, within GFF2879 at 596.488 kb on - strand, within GFF2879 at 596.536 kb on - strand, within GFF2879 at 596.568 kb on + strand, within GFF2879 at 596.568 kb on + strand, within GFF2879 at 596.569 kb on - strand, within GFF2879 at 596.574 kb on + strand, within GFF2879 at 596.575 kb on - strand, within GFF2879 at 596.575 kb on - strand, within GFF2879 at 596.575 kb on - strand, within GFF2879 at 596.577 kb on + strand, within GFF2879 at 596.578 kb on - strand, within GFF2879 at 596.578 kb on - strand, within GFF2879 at 596.578 kb on - strand, within GFF2879 at 596.578 kb on - strand, within GFF2879 at 596.625 kb on + strand, within GFF2879 at 596.625 kb on + strand, within GFF2879 at 596.646 kb on + strand, within GFF2879 at 596.646 kb on + strand, within GFF2879 at 596.712 kb on + strand, within GFF2879 at 596.712 kb on + strand, within GFF2879 at 596.713 kb on - strand, within GFF2879 at 596.713 kb on - strand, within GFF2879 at 596.713 kb on - strand, within GFF2879 at 597.015 kb on + strand at 597.061 kb on + strand at 597.062 kb on - strand at 597.344 kb on - strand at 597.414 kb on + strand at 597.460 kb on + strand at 597.484 kb on + strand at 597.485 kb on - strand at 597.501 kb on - strand at 597.713 kb on + strand at 597.799 kb on - strand at 597.860 kb on - strand at 597.860 kb on - strand at 597.868 kb on - strand at 597.915 kb on - strand at 597.925 kb on + strand at 597.993 kb on + strand, within GFF2882 at 598.001 kb on - strand, within GFF2882 at 598.094 kb on + strand, within GFF2882 at 598.095 kb on - strand, within GFF2882 at 598.126 kb on + strand at 598.212 kb on + strand at 598.212 kb on + strand at 598.217 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 596,442 + GFF2879 0.38 +1.6 596,487 + GFF2879 0.45 +0.2 596,488 - GFF2879 0.45 +0.1 596,488 - GFF2879 0.45 -0.9 596,536 - GFF2879 0.52 +3.1 596,568 + GFF2879 0.57 +0.3 596,568 + GFF2879 0.57 -0.1 596,569 - GFF2879 0.57 -0.0 596,574 + GFF2879 0.57 -1.2 596,575 - GFF2879 0.58 +1.2 596,575 - GFF2879 0.58 +0.3 596,575 - GFF2879 0.58 -1.6 596,577 + GFF2879 0.58 -0.8 596,578 - GFF2879 0.58 +0.6 596,578 - GFF2879 0.58 +0.5 596,578 - GFF2879 0.58 -2.7 596,578 - GFF2879 0.58 -0.6 596,625 + GFF2879 0.65 +0.7 596,625 + GFF2879 0.65 -0.9 596,646 + GFF2879 0.68 +1.2 596,646 + GFF2879 0.68 -0.7 596,712 + GFF2879 0.78 -0.6 596,712 + GFF2879 0.78 -0.6 596,713 - GFF2879 0.78 -0.6 596,713 - GFF2879 0.78 +0.1 596,713 - GFF2879 0.78 +1.0 597,015 + -0.4 597,061 + +0.4 597,062 - -0.5 597,344 - +0.5 597,414 + +0.8 597,460 + +0.3 597,484 + +0.1 597,485 - +1.3 597,501 - -0.3 597,713 + -0.2 597,799 - -1.7 597,860 - +0.1 597,860 - +0.0 597,868 - -0.4 597,915 - -1.1 597,925 + -0.2 597,993 + GFF2882 0.36 -0.8 598,001 - GFF2882 0.40 -1.5 598,094 + GFF2882 0.89 -0.2 598,095 - GFF2882 0.89 -0.5 598,126 + -0.2 598,212 + -0.2 598,212 + +0.1 598,217 + -0.7
Or see this region's nucleotide sequence