Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF286 and GFF287 are separated by 277 nucleotides GFF287 and GFF288 are separated by 41 nucleotides GFF288 and GFF289 are separated by 159 nucleotides GFF289 and GFF290 are separated by 49 nucleotides
GFF286 - HTH-type transcriptional regulator HdfR, at 302,386 to 303,348
GFF286
GFF287 - hypothetical protein, at 303,626 to 303,973
GFF287
GFF288 - Peptidoglycan-associated lipoprotein, at 304,015 to 304,626
GFF288
GFF289 - hypothetical protein, at 304,786 to 305,229
GFF289
GFF290 - hypothetical protein, at 305,279 to 305,764
GFF290
Position (kb) 304
305 Strain fitness (log2 ratio) -2
-1
0
1
2 at 303.175 kb on + strand, within GFF286 at 303.346 kb on + strand at 303.346 kb on + strand at 303.346 kb on + strand at 303.346 kb on + strand at 303.347 kb on - strand at 303.437 kb on + strand at 303.437 kb on + strand at 303.505 kb on + strand at 303.505 kb on + strand at 303.514 kb on + strand at 303.534 kb on + strand at 303.573 kb on + strand at 303.573 kb on + strand at 303.574 kb on - strand at 303.585 kb on + strand at 303.633 kb on - strand at 303.633 kb on - strand at 303.633 kb on - strand at 303.776 kb on + strand, within GFF287 at 303.966 kb on - strand at 304.322 kb on - strand, within GFF288 at 304.375 kb on + strand, within GFF288 at 304.769 kb on - strand at 304.960 kb on + strand, within GFF289 at 304.960 kb on + strand, within GFF289 at 304.960 kb on + strand, within GFF289 at 304.960 kb on + strand, within GFF289 at 304.960 kb on + strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 304.961 kb on - strand, within GFF289 at 305.041 kb on + strand, within GFF289 at 305.041 kb on + strand, within GFF289 at 305.041 kb on + strand, within GFF289 at 305.041 kb on + strand, within GFF289 at 305.042 kb on - strand, within GFF289 at 305.042 kb on - strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.182 kb on + strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.183 kb on - strand, within GFF289 at 305.579 kb on + strand, within GFF290 at 305.579 kb on + strand, within GFF290 at 305.580 kb on - strand, within GFF290 at 305.580 kb on - strand, within GFF290 at 305.580 kb on - strand, within GFF290 at 305.580 kb on - strand, within GFF290 at 305.580 kb on - strand, within GFF290
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 303,175 + GFF286 0.82 -0.4 303,346 + +0.5 303,346 + +0.1 303,346 + -0.8 303,346 + -0.2 303,347 - -0.9 303,437 + +0.3 303,437 + +0.4 303,505 + -0.8 303,505 + -1.0 303,514 + -0.6 303,534 + -0.3 303,573 + -0.6 303,573 + +0.1 303,574 - -1.3 303,585 + -1.0 303,633 - -0.1 303,633 - -0.8 303,633 - -0.8 303,776 + GFF287 0.43 -0.8 303,966 - -1.7 304,322 - GFF288 0.50 -0.4 304,375 + GFF288 0.59 +1.1 304,769 - +0.6 304,960 + GFF289 0.39 +1.8 304,960 + GFF289 0.39 +0.2 304,960 + GFF289 0.39 +0.1 304,960 + GFF289 0.39 -1.4 304,960 + GFF289 0.39 -0.8 304,961 - GFF289 0.39 -0.1 304,961 - GFF289 0.39 +0.9 304,961 - GFF289 0.39 -1.3 304,961 - GFF289 0.39 +0.8 304,961 - GFF289 0.39 -0.4 304,961 - GFF289 0.39 +0.8 304,961 - GFF289 0.39 -1.9 304,961 - GFF289 0.39 +0.6 304,961 - GFF289 0.39 +0.8 304,961 - GFF289 0.39 -2.7 304,961 - GFF289 0.39 +0.4 304,961 - GFF289 0.39 +1.1 305,041 + GFF289 0.57 -0.0 305,041 + GFF289 0.57 -2.5 305,041 + GFF289 0.57 +0.7 305,041 + GFF289 0.57 -0.0 305,042 - GFF289 0.58 -1.7 305,042 - GFF289 0.58 +0.2 305,182 + GFF289 0.89 -1.4 305,182 + GFF289 0.89 -0.4 305,182 + GFF289 0.89 +0.4 305,182 + GFF289 0.89 +0.4 305,182 + GFF289 0.89 -0.0 305,182 + GFF289 0.89 +1.5 305,182 + GFF289 0.89 -1.8 305,182 + GFF289 0.89 -0.5 305,182 + GFF289 0.89 -0.9 305,183 - GFF289 0.89 -0.1 305,183 - GFF289 0.89 +0.4 305,183 - GFF289 0.89 -0.6 305,183 - GFF289 0.89 -0.7 305,183 - GFF289 0.89 -2.3 305,183 - GFF289 0.89 -0.7 305,183 - GFF289 0.89 -0.9 305,183 - GFF289 0.89 -0.3 305,183 - GFF289 0.89 +0.9 305,183 - GFF289 0.89 +0.5 305,579 + GFF290 0.62 +0.6 305,579 + GFF290 0.62 +0.7 305,580 - GFF290 0.62 +0.1 305,580 - GFF290 0.62 -1.3 305,580 - GFF290 0.62 +0.5 305,580 - GFF290 0.62 -0.3 305,580 - GFF290 0.62 +1.1
Or see this region's nucleotide sequence