Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2863 and GFF2864 are separated by 17 nucleotides GFF2864 and GFF2865 are separated by 78 nucleotides GFF2865 and GFF2866 are separated by 589 nucleotides
GFF2863 - HTH-type transcriptional regulator BenM, at 578,457 to 579,398
GFF2863
GFF2864 - putative oxidoreductase, at 579,416 to 580,219
GFF2864
GFF2865 - 3-hydroxybenzoate transporter MhbT, at 580,298 to 581,650
GFF2865
GFF2866 - Betaine aldehyde dehydrogenase, at 582,240 to 583,727
GFF2866
Position (kb) 580
581
582 Strain fitness (log2 ratio) -2
-1
0
1
2 at 579.330 kb on + strand at 579.330 kb on + strand at 579.330 kb on + strand at 579.462 kb on + strand at 579.462 kb on + strand at 579.462 kb on + strand at 579.463 kb on - strand at 579.463 kb on - strand at 579.463 kb on - strand at 579.463 kb on - strand at 579.522 kb on + strand, within GFF2864 at 579.735 kb on + strand, within GFF2864 at 579.811 kb on - strand, within GFF2864 at 579.811 kb on - strand, within GFF2864 at 579.953 kb on + strand, within GFF2864 at 579.996 kb on + strand, within GFF2864 at 579.997 kb on - strand, within GFF2864 at 580.519 kb on - strand, within GFF2865 at 580.845 kb on + strand, within GFF2865 at 580.845 kb on + strand, within GFF2865 at 580.845 kb on + strand, within GFF2865 at 580.845 kb on + strand, within GFF2865 at 580.846 kb on - strand, within GFF2865 at 581.058 kb on + strand, within GFF2865 at 581.195 kb on - strand, within GFF2865 at 581.226 kb on + strand, within GFF2865 at 581.449 kb on + strand, within GFF2865 at 581.842 kb on + strand at 581.885 kb on - strand at 581.912 kb on + strand at 581.920 kb on - strand at 581.921 kb on + strand at 582.198 kb on - strand at 582.198 kb on - strand at 582.241 kb on + strand at 582.322 kb on + strand at 582.322 kb on + strand at 582.322 kb on + strand at 582.323 kb on - strand at 582.323 kb on - strand at 582.323 kb on - strand at 582.323 kb on - strand at 582.415 kb on + strand, within GFF2866 at 582.415 kb on + strand, within GFF2866 at 582.416 kb on - strand, within GFF2866 at 582.416 kb on - strand, within GFF2866 at 582.416 kb on - strand, within GFF2866 at 582.487 kb on + strand, within GFF2866 at 582.487 kb on + strand, within GFF2866 at 582.487 kb on + strand, within GFF2866 at 582.487 kb on + strand, within GFF2866 at 582.488 kb on - strand, within GFF2866 at 582.488 kb on - strand, within GFF2866 at 582.488 kb on - strand, within GFF2866 at 582.488 kb on - strand, within GFF2866 at 582.488 kb on - strand, within GFF2866 at 582.488 kb on - strand, within GFF2866 at 582.488 kb on - strand, within GFF2866 at 582.646 kb on + strand, within GFF2866 at 582.647 kb on - strand, within GFF2866 at 582.647 kb on - strand, within GFF2866
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 579,330 + -2.4 579,330 + -1.0 579,330 + -1.9 579,462 + -1.6 579,462 + +0.2 579,462 + +0.8 579,463 - -0.2 579,463 - +0.9 579,463 - +0.2 579,463 - -2.4 579,522 + GFF2864 0.13 -0.5 579,735 + GFF2864 0.40 +1.7 579,811 - GFF2864 0.49 +0.9 579,811 - GFF2864 0.49 -2.4 579,953 + GFF2864 0.67 -0.1 579,996 + GFF2864 0.72 -0.1 579,997 - GFF2864 0.72 +0.3 580,519 - GFF2865 0.16 -0.7 580,845 + GFF2865 0.40 +0.5 580,845 + GFF2865 0.40 -0.4 580,845 + GFF2865 0.40 +0.3 580,845 + GFF2865 0.40 +1.3 580,846 - GFF2865 0.41 +0.4 581,058 + GFF2865 0.56 -2.5 581,195 - GFF2865 0.66 -0.1 581,226 + GFF2865 0.69 +1.4 581,449 + GFF2865 0.85 +0.1 581,842 + +1.6 581,885 - +2.5 581,912 + -1.6 581,920 - -0.7 581,921 + -0.2 582,198 - -1.0 582,198 - -0.3 582,241 + -2.2 582,322 + -0.9 582,322 + -0.3 582,322 + -1.1 582,323 - -0.3 582,323 - +1.4 582,323 - +1.8 582,323 - +1.0 582,415 + GFF2866 0.12 +1.5 582,415 + GFF2866 0.12 +0.0 582,416 - GFF2866 0.12 +0.7 582,416 - GFF2866 0.12 +0.4 582,416 - GFF2866 0.12 -0.1 582,487 + GFF2866 0.17 +0.7 582,487 + GFF2866 0.17 -0.5 582,487 + GFF2866 0.17 +0.8 582,487 + GFF2866 0.17 -0.5 582,488 - GFF2866 0.17 +0.1 582,488 - GFF2866 0.17 -0.0 582,488 - GFF2866 0.17 +0.0 582,488 - GFF2866 0.17 +0.1 582,488 - GFF2866 0.17 +1.1 582,488 - GFF2866 0.17 +1.3 582,488 - GFF2866 0.17 -0.8 582,646 + GFF2866 0.27 -0.1 582,647 - GFF2866 0.27 +1.3 582,647 - GFF2866 0.27 +0.3
Or see this region's nucleotide sequence