Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2849 and GFF2850 are separated by 53 nucleotides GFF2850 and GFF2851 are separated by 56 nucleotides GFF2851 and GFF2852 are separated by 2 nucleotides
GFF2849 - Apulose-4-phosphate transketolase subunit B, at 560,353 to 561,390
GFF2849
GFF2850 - L-threonate dehydrogenase, at 561,444 to 562,322
GFF2850
GFF2851 - 2,3-diketo-L-gulonate-binding periplasmic protein YiaO, at 562,379 to 563,404
GFF2851
GFF2852 - Sialic acid TRAP transporter permease protein SiaT, at 563,407 to 565,353
GFF2852
Position (kb) 562
563
564 Strain fitness (log2 ratio) -2
-1
0
1
2 at 561.388 kb on + strand at 561.389 kb on - strand at 561.396 kb on + strand at 562.269 kb on - strand at 562.296 kb on + strand at 562.306 kb on + strand at 562.307 kb on - strand at 562.320 kb on + strand at 562.320 kb on + strand at 562.321 kb on - strand at 562.326 kb on + strand at 562.364 kb on + strand at 562.365 kb on - strand at 562.365 kb on - strand at 562.365 kb on - strand at 562.381 kb on - strand at 562.487 kb on + strand, within GFF2851 at 562.488 kb on - strand, within GFF2851 at 562.493 kb on + strand, within GFF2851 at 562.494 kb on - strand, within GFF2851 at 562.742 kb on + strand, within GFF2851 at 562.784 kb on + strand, within GFF2851 at 562.785 kb on - strand, within GFF2851 at 562.995 kb on - strand, within GFF2851 at 563.067 kb on - strand, within GFF2851 at 563.067 kb on - strand, within GFF2851 at 563.114 kb on + strand, within GFF2851 at 563.327 kb on + strand at 563.327 kb on + strand at 563.420 kb on + strand at 563.420 kb on + strand at 563.482 kb on + strand at 563.575 kb on + strand at 563.639 kb on - strand, within GFF2852 at 563.860 kb on + strand, within GFF2852 at 563.861 kb on - strand, within GFF2852 at 563.961 kb on + strand, within GFF2852 at 563.961 kb on + strand, within GFF2852 at 564.082 kb on + strand, within GFF2852 at 564.082 kb on + strand, within GFF2852 at 564.083 kb on - strand, within GFF2852 at 564.175 kb on + strand, within GFF2852 at 564.176 kb on - strand, within GFF2852 at 564.176 kb on - strand, within GFF2852 at 564.367 kb on + strand, within GFF2852 at 564.367 kb on + strand, within GFF2852 at 564.368 kb on - strand, within GFF2852 at 564.368 kb on - strand, within GFF2852 at 564.368 kb on - strand, within GFF2852 at 564.388 kb on + strand, within GFF2852 at 564.388 kb on + strand, within GFF2852 at 564.388 kb on + strand, within GFF2852 at 564.389 kb on - strand, within GFF2852 at 564.389 kb on - strand, within GFF2852 at 564.389 kb on - strand, within GFF2852 at 564.389 kb on - strand, within GFF2852
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 561,388 + -0.5 561,389 - -0.0 561,396 + +0.9 562,269 - -0.2 562,296 + -2.0 562,306 + -0.4 562,307 - +0.1 562,320 + -1.0 562,320 + +1.9 562,321 - +1.2 562,326 + +0.8 562,364 + +0.5 562,365 - +0.7 562,365 - +0.5 562,365 - +1.5 562,381 - +0.1 562,487 + GFF2851 0.11 -0.0 562,488 - GFF2851 0.11 +0.6 562,493 + GFF2851 0.11 +0.3 562,494 - GFF2851 0.11 -0.6 562,742 + GFF2851 0.35 -1.4 562,784 + GFF2851 0.39 +0.5 562,785 - GFF2851 0.40 -0.0 562,995 - GFF2851 0.60 +0.1 563,067 - GFF2851 0.67 +0.4 563,067 - GFF2851 0.67 +1.5 563,114 + GFF2851 0.72 +0.1 563,327 + -0.3 563,327 + +1.7 563,420 + -1.0 563,420 + +1.3 563,482 + -0.8 563,575 + -0.2 563,639 - GFF2852 0.12 +0.7 563,860 + GFF2852 0.23 -0.9 563,861 - GFF2852 0.23 -0.7 563,961 + GFF2852 0.28 +0.4 563,961 + GFF2852 0.28 -0.4 564,082 + GFF2852 0.35 -0.7 564,082 + GFF2852 0.35 -0.2 564,083 - GFF2852 0.35 -0.5 564,175 + GFF2852 0.39 +0.6 564,176 - GFF2852 0.39 -0.5 564,176 - GFF2852 0.39 +1.0 564,367 + GFF2852 0.49 -0.8 564,367 + GFF2852 0.49 +0.3 564,368 - GFF2852 0.49 +0.4 564,368 - GFF2852 0.49 -0.5 564,368 - GFF2852 0.49 +0.3 564,388 + GFF2852 0.50 +0.6 564,388 + GFF2852 0.50 -0.6 564,388 + GFF2852 0.50 +1.2 564,389 - GFF2852 0.50 +0.2 564,389 - GFF2852 0.50 +0.4 564,389 - GFF2852 0.50 +2.1 564,389 - GFF2852 0.50 +0.5
Or see this region's nucleotide sequence