Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF281 and GFF282 are separated by 106 nucleotides GFF282 and GFF283 overlap by 8 nucleotides GFF283 and GFF284 overlap by 4 nucleotides GFF284 and GFF285 are separated by 239 nucleotides
GFF281 - Formyltetrahydrofolate deformylase, at 295,955 to 296,824
GFF281
GFF282 - hypothetical protein, at 296,931 to 297,539
GFF282
GFF283 - Sarcosine oxidase subunit alpha, at 297,532 to 300,486
GFF283
GFF284 - Sarcosine oxidase subunit delta, at 300,483 to 300,767
GFF284
GFF285 - Sarcosine oxidase subunit beta, at 301,007 to 302,260
GFF285
Position (kb) 297
298
299
300
301 Strain fitness (log2 ratio) -2
-1
0
1 at 296.835 kb on + strand at 296.835 kb on + strand at 296.836 kb on - strand at 296.965 kb on + strand at 296.965 kb on + strand at 296.966 kb on - strand at 296.966 kb on - strand at 297.035 kb on - strand, within GFF282 at 297.580 kb on + strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.617 kb on + strand at 297.698 kb on + strand at 297.699 kb on - strand at 297.699 kb on - strand at 297.716 kb on + strand at 297.716 kb on + strand at 297.716 kb on + strand at 297.717 kb on - strand at 297.717 kb on - strand at 297.717 kb on - strand at 298.010 kb on + strand, within GFF283 at 298.011 kb on - strand, within GFF283 at 298.364 kb on + strand, within GFF283 at 298.364 kb on + strand, within GFF283 at 298.364 kb on + strand, within GFF283 at 298.365 kb on - strand, within GFF283 at 298.365 kb on - strand, within GFF283 at 298.470 kb on + strand, within GFF283 at 298.470 kb on + strand, within GFF283 at 298.471 kb on - strand, within GFF283 at 298.471 kb on - strand, within GFF283 at 298.471 kb on - strand, within GFF283 at 298.471 kb on - strand, within GFF283 at 298.478 kb on + strand, within GFF283 at 298.478 kb on + strand, within GFF283 at 298.478 kb on + strand, within GFF283 at 298.889 kb on + strand, within GFF283 at 298.889 kb on + strand, within GFF283 at 299.307 kb on + strand, within GFF283 at 299.555 kb on + strand, within GFF283 at 299.555 kb on + strand, within GFF283 at 299.555 kb on + strand, within GFF283 at 299.556 kb on - strand, within GFF283 at 299.556 kb on - strand, within GFF283 at 299.556 kb on - strand, within GFF283 at 299.751 kb on - strand, within GFF283 at 300.009 kb on - strand, within GFF283 at 300.009 kb on - strand, within GFF283 at 300.074 kb on + strand, within GFF283 at 300.075 kb on - strand, within GFF283 at 300.117 kb on - strand, within GFF283 at 300.117 kb on - strand, within GFF283 at 300.120 kb on - strand, within GFF283 at 300.335 kb on + strand at 300.336 kb on - strand at 300.394 kb on - strand at 300.413 kb on + strand at 300.414 kb on - strand at 300.598 kb on + strand, within GFF284 at 300.640 kb on + strand, within GFF284 at 300.641 kb on - strand, within GFF284 at 300.646 kb on + strand, within GFF284 at 300.646 kb on + strand, within GFF284 at 300.647 kb on - strand, within GFF284 at 300.756 kb on + strand at 301.167 kb on + strand, within GFF285 at 301.167 kb on + strand, within GFF285 at 301.265 kb on + strand, within GFF285 at 301.265 kb on + strand, within GFF285 at 301.266 kb on - strand, within GFF285 at 301.266 kb on - strand, within GFF285 at 301.294 kb on + strand, within GFF285 at 301.295 kb on - strand, within GFF285 at 301.354 kb on - strand, within GFF285 at 301.416 kb on + strand, within GFF285 at 301.417 kb on - strand, within GFF285
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 296,835 + -0.4 296,835 + -0.3 296,836 - +0.2 296,965 + -1.1 296,965 + +0.1 296,966 - -0.2 296,966 - -0.4 297,035 - GFF282 0.17 -0.0 297,580 + +0.3 297,581 - -0.7 297,581 - -0.3 297,581 - -1.3 297,581 - -0.3 297,581 - -1.7 297,581 - -0.6 297,581 - -0.3 297,581 - -0.6 297,581 - -2.2 297,581 - +0.1 297,617 + +1.3 297,698 + +1.0 297,699 - +0.3 297,699 - -0.3 297,716 + +1.3 297,716 + -0.5 297,716 + +0.1 297,717 - -1.4 297,717 - -0.2 297,717 - -1.1 298,010 + GFF283 0.16 +0.4 298,011 - GFF283 0.16 +0.5 298,364 + GFF283 0.28 +1.1 298,364 + GFF283 0.28 -0.8 298,364 + GFF283 0.28 +0.8 298,365 - GFF283 0.28 +1.2 298,365 - GFF283 0.28 -0.4 298,470 + GFF283 0.32 -0.3 298,470 + GFF283 0.32 -0.3 298,471 - GFF283 0.32 +0.4 298,471 - GFF283 0.32 +0.2 298,471 - GFF283 0.32 +0.1 298,471 - GFF283 0.32 -0.2 298,478 + GFF283 0.32 -0.9 298,478 + GFF283 0.32 -0.2 298,478 + GFF283 0.32 +0.6 298,889 + GFF283 0.46 +0.5 298,889 + GFF283 0.46 -1.2 299,307 + GFF283 0.60 -0.4 299,555 + GFF283 0.68 -1.0 299,555 + GFF283 0.68 -0.4 299,555 + GFF283 0.68 -0.6 299,556 - GFF283 0.68 -1.0 299,556 - GFF283 0.68 +0.1 299,556 - GFF283 0.68 -0.7 299,751 - GFF283 0.75 -0.4 300,009 - GFF283 0.84 +1.1 300,009 - GFF283 0.84 -0.4 300,074 + GFF283 0.86 +0.3 300,075 - GFF283 0.86 -0.7 300,117 - GFF283 0.87 +0.3 300,117 - GFF283 0.87 -0.0 300,120 - GFF283 0.88 -0.9 300,335 + -0.8 300,336 - -2.2 300,394 - -0.8 300,413 + -0.5 300,414 - +0.1 300,598 + GFF284 0.40 -0.4 300,640 + GFF284 0.55 -0.1 300,641 - GFF284 0.55 +1.3 300,646 + GFF284 0.57 +0.4 300,646 + GFF284 0.57 +0.1 300,647 - GFF284 0.58 -0.7 300,756 + -0.7 301,167 + GFF285 0.13 -1.2 301,167 + GFF285 0.13 -0.2 301,265 + GFF285 0.21 -0.2 301,265 + GFF285 0.21 +0.3 301,266 - GFF285 0.21 -0.8 301,266 - GFF285 0.21 -0.9 301,294 + GFF285 0.23 +1.4 301,295 - GFF285 0.23 -0.8 301,354 - GFF285 0.28 +0.3 301,416 + GFF285 0.33 +1.5 301,417 - GFF285 0.33 +0.1
Or see this region's nucleotide sequence