Strain Fitness in Xanthobacter sp. DMC5 around GFF2829

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2827 and GFF2828 are separated by 16 nucleotidesGFF2828 and GFF2829 are separated by 23 nucleotidesGFF2829 and GFF2830 are separated by 177 nucleotidesGFF2830 and GFF2831 are separated by 66 nucleotides GFF2827 - hypothetical protein, at 536,765 to 537,781 GFF2827 GFF2828 - 3-keto-5-aminohexanoate cleavage enzyme, at 537,798 to 538,724 GFF2828 GFF2829 - Kynurenine formamidase, at 538,748 to 539,521 GFF2829 GFF2830 - hypothetical protein, at 539,699 to 540,427 GFF2830 GFF2831 - putative oxidoreductase, at 540,494 to 541,270 GFF2831 Position (kb) 538 539 540Strain fitness (log2 ratio) -1 0 1at 538.048 kb on + strand, within GFF2828at 538.048 kb on + strand, within GFF2828at 538.049 kb on - strand, within GFF2828at 538.049 kb on - strand, within GFF2828at 538.049 kb on - strand, within GFF2828at 538.196 kb on - strand, within GFF2828at 538.213 kb on + strand, within GFF2828at 538.214 kb on - strand, within GFF2828at 538.214 kb on - strand, within GFF2828at 538.214 kb on - strand, within GFF2828at 538.214 kb on - strand, within GFF2828at 538.262 kb on - strand, within GFF2828at 538.322 kb on - strand, within GFF2828at 538.322 kb on - strand, within GFF2828at 538.878 kb on + strand, within GFF2829at 538.878 kb on + strand, within GFF2829at 538.879 kb on - strand, within GFF2829at 538.879 kb on - strand, within GFF2829at 538.879 kb on - strand, within GFF2829at 538.879 kb on - strand, within GFF2829at 538.879 kb on - strand, within GFF2829at 539.062 kb on + strand, within GFF2829at 539.062 kb on + strand, within GFF2829at 539.062 kb on + strand, within GFF2829at 539.064 kb on + strand, within GFF2829at 539.064 kb on + strand, within GFF2829at 539.064 kb on + strand, within GFF2829at 539.065 kb on - strand, within GFF2829at 539.065 kb on - strand, within GFF2829at 539.080 kb on - strand, within GFF2829at 539.196 kb on + strand, within GFF2829at 539.196 kb on + strand, within GFF2829at 539.251 kb on - strand, within GFF2829at 539.270 kb on - strand, within GFF2829at 539.292 kb on + strand, within GFF2829at 539.292 kb on + strand, within GFF2829at 539.292 kb on + strand, within GFF2829at 539.335 kb on + strand, within GFF2829at 539.335 kb on + strand, within GFF2829at 539.335 kb on + strand, within GFF2829at 539.336 kb on - strand, within GFF2829at 539.559 kb on + strandat 539.559 kb on + strandat 539.861 kb on + strand, within GFF2830at 539.862 kb on - strand, within GFF2830at 539.924 kb on + strand, within GFF2830at 539.925 kb on - strand, within GFF2830at 539.925 kb on - strand, within GFF2830at 539.928 kb on - strand, within GFF2830at 539.928 kb on - strand, within GFF2830at 539.928 kb on - strand, within GFF2830at 539.938 kb on + strand, within GFF2830at 539.995 kb on + strand, within GFF2830at 539.995 kb on + strand, within GFF2830at 539.995 kb on + strand, within GFF2830at 539.996 kb on - strand, within GFF2830at 539.996 kb on - strand, within GFF2830at 540.090 kb on - strand, within GFF2830at 540.182 kb on + strand, within GFF2830at 540.182 kb on + strand, within GFF2830at 540.183 kb on - strand, within GFF2830at 540.183 kb on - strand, within GFF2830at 540.183 kb on - strand, within GFF2830at 540.263 kb on + strand, within GFF2830at 540.263 kb on + strand, within GFF2830at 540.269 kb on + strand, within GFF2830at 540.270 kb on - strand, within GFF2830at 540.270 kb on - strand, within GFF2830at 540.270 kb on - strand, within GFF2830at 540.270 kb on - strand, within GFF2830at 540.293 kb on + strand, within GFF2830at 540.294 kb on - strand, within GFF2830at 540.425 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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538,048 + GFF2828 0.27 -1.4
538,048 + GFF2828 0.27 +0.7
538,049 - GFF2828 0.27 -0.4
538,049 - GFF2828 0.27 -0.7
538,049 - GFF2828 0.27 -0.1
538,196 - GFF2828 0.43 -1.2
538,213 + GFF2828 0.45 -0.3
538,214 - GFF2828 0.45 +1.4
538,214 - GFF2828 0.45 +0.7
538,214 - GFF2828 0.45 +0.1
538,214 - GFF2828 0.45 -0.9
538,262 - GFF2828 0.50 -0.7
538,322 - GFF2828 0.57 +1.0
538,322 - GFF2828 0.57 +0.5
538,878 + GFF2829 0.17 +0.1
538,878 + GFF2829 0.17 -0.7
538,879 - GFF2829 0.17 -0.9
538,879 - GFF2829 0.17 +0.8
538,879 - GFF2829 0.17 -1.2
538,879 - GFF2829 0.17 +0.6
538,879 - GFF2829 0.17 -0.3
539,062 + GFF2829 0.41 +0.6
539,062 + GFF2829 0.41 -0.8
539,062 + GFF2829 0.41 +0.6
539,064 + GFF2829 0.41 -0.9
539,064 + GFF2829 0.41 +1.0
539,064 + GFF2829 0.41 +1.0
539,065 - GFF2829 0.41 -0.2
539,065 - GFF2829 0.41 +0.4
539,080 - GFF2829 0.43 -1.5
539,196 + GFF2829 0.58 +0.7
539,196 + GFF2829 0.58 +0.6
539,251 - GFF2829 0.65 +0.3
539,270 - GFF2829 0.67 +0.1
539,292 + GFF2829 0.70 +1.0
539,292 + GFF2829 0.70 -0.1
539,292 + GFF2829 0.70 +0.5
539,335 + GFF2829 0.76 +0.2
539,335 + GFF2829 0.76 -0.0
539,335 + GFF2829 0.76 +1.1
539,336 - GFF2829 0.76 -0.6
539,559 + -0.7
539,559 + +0.2
539,861 + GFF2830 0.22 +0.5
539,862 - GFF2830 0.22 -0.1
539,924 + GFF2830 0.31 +0.3
539,925 - GFF2830 0.31 +0.0
539,925 - GFF2830 0.31 -0.7
539,928 - GFF2830 0.31 -1.3
539,928 - GFF2830 0.31 -0.1
539,928 - GFF2830 0.31 -0.5
539,938 + GFF2830 0.33 -0.0
539,995 + GFF2830 0.41 -1.2
539,995 + GFF2830 0.41 +0.1
539,995 + GFF2830 0.41 -1.4
539,996 - GFF2830 0.41 +0.0
539,996 - GFF2830 0.41 -0.7
540,090 - GFF2830 0.54 -1.2
540,182 + GFF2830 0.66 -0.4
540,182 + GFF2830 0.66 -0.5
540,183 - GFF2830 0.66 -0.2
540,183 - GFF2830 0.66 +0.1
540,183 - GFF2830 0.66 -0.6
540,263 + GFF2830 0.77 +0.3
540,263 + GFF2830 0.77 -0.0
540,269 + GFF2830 0.78 -0.6
540,270 - GFF2830 0.78 -1.6
540,270 - GFF2830 0.78 -0.3
540,270 - GFF2830 0.78 -0.5
540,270 - GFF2830 0.78 -0.2
540,293 + GFF2830 0.81 -0.9
540,294 - GFF2830 0.82 +0.3
540,425 + +0.1

Or see this region's nucleotide sequence