Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2821 and GFF2822 are separated by 20 nucleotides GFF2822 and GFF2823 are separated by 301 nucleotides
GFF2821 - Exodeoxyribonuclease III, at 529,878 to 530,735
GFF2821
GFF2822 - Anaerobic nitric oxide reductase transcription regulator NorR, at 530,756 to 532,144
GFF2822
GFF2823 - putative 3-hydroxybutyryl-CoA dehydrogenase, at 532,446 to 533,354
GFF2823
Position (kb) 530
531
532
533 Strain fitness (log2 ratio) -1
0
1 at 529.781 kb on - strand at 529.781 kb on - strand at 529.814 kb on + strand at 529.814 kb on + strand at 529.857 kb on - strand at 530.092 kb on - strand, within GFF2821 at 530.211 kb on + strand, within GFF2821 at 530.212 kb on - strand, within GFF2821 at 530.253 kb on + strand, within GFF2821 at 530.253 kb on + strand, within GFF2821 at 530.295 kb on + strand, within GFF2821 at 530.532 kb on + strand, within GFF2821 at 530.532 kb on + strand, within GFF2821 at 530.533 kb on - strand, within GFF2821 at 530.533 kb on - strand, within GFF2821 at 530.533 kb on - strand, within GFF2821 at 530.547 kb on + strand, within GFF2821 at 530.769 kb on + strand at 530.769 kb on + strand at 530.770 kb on - strand at 530.788 kb on - strand at 530.788 kb on - strand at 531.000 kb on + strand, within GFF2822 at 531.000 kb on + strand, within GFF2822 at 531.001 kb on - strand, within GFF2822 at 531.001 kb on - strand, within GFF2822 at 531.210 kb on + strand, within GFF2822 at 531.210 kb on + strand, within GFF2822 at 531.210 kb on + strand, within GFF2822 at 531.211 kb on - strand, within GFF2822 at 531.211 kb on - strand, within GFF2822 at 531.792 kb on + strand, within GFF2822 at 531.793 kb on - strand, within GFF2822 at 531.803 kb on - strand, within GFF2822 at 531.891 kb on + strand, within GFF2822 at 531.892 kb on - strand, within GFF2822 at 532.646 kb on + strand, within GFF2823 at 532.647 kb on - strand, within GFF2823 at 532.802 kb on + strand, within GFF2823
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 529,781 - -0.7 529,781 - +0.3 529,814 + -1.0 529,814 + -0.5 529,857 - -0.4 530,092 - GFF2821 0.25 -0.4 530,211 + GFF2821 0.39 +0.5 530,212 - GFF2821 0.39 -0.3 530,253 + GFF2821 0.44 +0.6 530,253 + GFF2821 0.44 +0.4 530,295 + GFF2821 0.49 +1.4 530,532 + GFF2821 0.76 +0.3 530,532 + GFF2821 0.76 +0.2 530,533 - GFF2821 0.76 +1.1 530,533 - GFF2821 0.76 +1.1 530,533 - GFF2821 0.76 +0.8 530,547 + GFF2821 0.78 -1.1 530,769 + -0.0 530,769 + +0.4 530,770 - -0.4 530,788 - -0.8 530,788 - +0.2 531,000 + GFF2822 0.18 +0.3 531,000 + GFF2822 0.18 +0.3 531,001 - GFF2822 0.18 -0.5 531,001 - GFF2822 0.18 -0.4 531,210 + GFF2822 0.33 +0.6 531,210 + GFF2822 0.33 -0.6 531,210 + GFF2822 0.33 -0.9 531,211 - GFF2822 0.33 +0.7 531,211 - GFF2822 0.33 +0.3 531,792 + GFF2822 0.75 +0.8 531,793 - GFF2822 0.75 +0.3 531,803 - GFF2822 0.75 -1.3 531,891 + GFF2822 0.82 -0.1 531,892 - GFF2822 0.82 -0.6 532,646 + GFF2823 0.22 -0.8 532,647 - GFF2823 0.22 +0.3 532,802 + GFF2823 0.39 -0.3
Or see this region's nucleotide sequence