Strain Fitness in Xanthobacter sp. DMC5 around GFF2819

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2818 and GFF2819 are separated by 166 nucleotidesGFF2819 and GFF2820 are separated by 7 nucleotidesGFF2820 and GFF2821 are separated by 130 nucleotides GFF2818 - Acyl-CoA dehydrogenase, at 526,608 to 527,774 GFF2818 GFF2819 - Alcohol dehydrogenase, at 527,941 to 528,963 GFF2819 GFF2820 - putative enoyl-CoA hydratase echA8, at 528,971 to 529,747 GFF2820 GFF2821 - Exodeoxyribonuclease III, at 529,878 to 530,735 GFF2821 Position (kb) 527 528 529Strain fitness (log2 ratio) -1 0 1 2at 526.982 kb on - strand, within GFF2818at 527.148 kb on + strand, within GFF2818at 527.148 kb on + strand, within GFF2818at 527.148 kb on + strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.335 kb on + strand, within GFF2818at 527.335 kb on + strand, within GFF2818at 527.335 kb on + strand, within GFF2818at 527.336 kb on - strand, within GFF2818at 527.336 kb on - strand, within GFF2818at 527.336 kb on - strand, within GFF2818at 527.336 kb on - strand, within GFF2818at 527.336 kb on - strand, within GFF2818at 527.336 kb on - strand, within GFF2818at 527.449 kb on + strand, within GFF2818at 527.450 kb on - strand, within GFF2818at 527.602 kb on + strand, within GFF2818at 527.602 kb on + strand, within GFF2818at 527.602 kb on + strand, within GFF2818at 527.603 kb on - strand, within GFF2818at 527.603 kb on - strand, within GFF2818at 527.904 kb on - strandat 528.070 kb on + strand, within GFF2819at 528.070 kb on + strand, within GFF2819at 528.070 kb on + strand, within GFF2819at 528.070 kb on + strand, within GFF2819at 528.071 kb on - strand, within GFF2819at 528.071 kb on - strand, within GFF2819at 528.071 kb on - strand, within GFF2819at 528.071 kb on - strand, within GFF2819at 528.071 kb on - strand, within GFF2819at 528.202 kb on + strand, within GFF2819at 528.203 kb on - strand, within GFF2819at 528.203 kb on - strand, within GFF2819at 528.260 kb on - strand, within GFF2819at 528.304 kb on + strand, within GFF2819at 528.304 kb on + strand, within GFF2819at 528.304 kb on + strand, within GFF2819at 528.386 kb on - strand, within GFF2819at 528.476 kb on - strand, within GFF2819at 528.476 kb on - strand, within GFF2819at 528.522 kb on + strand, within GFF2819at 528.584 kb on - strand, within GFF2819at 528.955 kb on - strandat 528.955 kb on - strandat 528.970 kb on + strandat 528.970 kb on + strandat 528.970 kb on + strandat 528.971 kb on - strandat 528.978 kb on - strandat 528.978 kb on - strandat 529.412 kb on - strand, within GFF2820at 529.412 kb on - strand, within GFF2820at 529.526 kb on + strand, within GFF2820at 529.526 kb on + strand, within GFF2820at 529.526 kb on + strand, within GFF2820at 529.527 kb on - strand, within GFF2820at 529.527 kb on - strand, within GFF2820at 529.527 kb on - strand, within GFF2820at 529.527 kb on - strand, within GFF2820at 529.527 kb on - strand, within GFF2820at 529.527 kb on - strand, within GFF2820at 529.616 kb on + strand, within GFF2820at 529.617 kb on - strand, within GFF2820at 529.617 kb on - strand, within GFF2820at 529.617 kb on - strand, within GFF2820at 529.643 kb on + strand, within GFF2820at 529.643 kb on + strand, within GFF2820at 529.644 kb on - strand, within GFF2820at 529.664 kb on + strand, within GFF2820at 529.664 kb on + strand, within GFF2820at 529.664 kb on + strand, within GFF2820at 529.665 kb on - strand, within GFF2820at 529.781 kb on - strandat 529.781 kb on - strandat 529.814 kb on + strandat 529.814 kb on + strandat 529.857 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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526,982 - GFF2818 0.32 +1.3
527,148 + GFF2818 0.46 -0.3
527,148 + GFF2818 0.46 +0.3
527,148 + GFF2818 0.46 +0.6
527,149 - GFF2818 0.46 -0.0
527,149 - GFF2818 0.46 +0.3
527,149 - GFF2818 0.46 +0.8
527,149 - GFF2818 0.46 +0.2
527,149 - GFF2818 0.46 +0.1
527,149 - GFF2818 0.46 -0.7
527,149 - GFF2818 0.46 -1.0
527,335 + GFF2818 0.62 +0.5
527,335 + GFF2818 0.62 -1.4
527,335 + GFF2818 0.62 -0.2
527,336 - GFF2818 0.62 -0.7
527,336 - GFF2818 0.62 -1.5
527,336 - GFF2818 0.62 +0.0
527,336 - GFF2818 0.62 -0.9
527,336 - GFF2818 0.62 -0.6
527,336 - GFF2818 0.62 -0.3
527,449 + GFF2818 0.72 -0.6
527,450 - GFF2818 0.72 +0.7
527,602 + GFF2818 0.85 +2.0
527,602 + GFF2818 0.85 -0.9
527,602 + GFF2818 0.85 -1.6
527,603 - GFF2818 0.85 +0.2
527,603 - GFF2818 0.85 +0.4
527,904 - -0.2
528,070 + GFF2819 0.13 -0.8
528,070 + GFF2819 0.13 +1.9
528,070 + GFF2819 0.13 +0.4
528,070 + GFF2819 0.13 +0.3
528,071 - GFF2819 0.13 +1.3
528,071 - GFF2819 0.13 +0.3
528,071 - GFF2819 0.13 -0.0
528,071 - GFF2819 0.13 -0.7
528,071 - GFF2819 0.13 -1.7
528,202 + GFF2819 0.26 +0.3
528,203 - GFF2819 0.26 -0.0
528,203 - GFF2819 0.26 +0.1
528,260 - GFF2819 0.31 -0.4
528,304 + GFF2819 0.35 +0.3
528,304 + GFF2819 0.35 -0.3
528,304 + GFF2819 0.35 -0.0
528,386 - GFF2819 0.43 +1.7
528,476 - GFF2819 0.52 -0.8
528,476 - GFF2819 0.52 -1.0
528,522 + GFF2819 0.57 -0.0
528,584 - GFF2819 0.63 -0.5
528,955 - -0.5
528,955 - +0.4
528,970 + -0.0
528,970 + +1.9
528,970 + -0.4
528,971 - -0.5
528,978 - -0.6
528,978 - -0.5
529,412 - GFF2820 0.57 +1.6
529,412 - GFF2820 0.57 -0.4
529,526 + GFF2820 0.71 +0.1
529,526 + GFF2820 0.71 -0.3
529,526 + GFF2820 0.71 +0.3
529,527 - GFF2820 0.72 -1.0
529,527 - GFF2820 0.72 -1.0
529,527 - GFF2820 0.72 +1.3
529,527 - GFF2820 0.72 -0.5
529,527 - GFF2820 0.72 -0.3
529,527 - GFF2820 0.72 +0.2
529,616 + GFF2820 0.83 -0.4
529,617 - GFF2820 0.83 -1.0
529,617 - GFF2820 0.83 +1.0
529,617 - GFF2820 0.83 +0.1
529,643 + GFF2820 0.86 +0.7
529,643 + GFF2820 0.86 -0.9
529,644 - GFF2820 0.87 +0.9
529,664 + GFF2820 0.89 +0.3
529,664 + GFF2820 0.89 -0.3
529,664 + GFF2820 0.89 -0.3
529,665 - GFF2820 0.89 -0.3
529,781 - -0.7
529,781 - +0.3
529,814 + -1.0
529,814 + -0.5
529,857 - -0.4

Or see this region's nucleotide sequence