Strain Fitness in Xanthobacter sp. DMC5 around GFF2818

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2816 and GFF2817 are separated by 209 nucleotidesGFF2817 and GFF2818 overlap by 35 nucleotidesGFF2818 and GFF2819 are separated by 166 nucleotides GFF2816 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 525,096 to 525,866 GFF2816 GFF2817 - hypothetical protein, at 526,076 to 526,642 GFF2817 GFF2818 - Acyl-CoA dehydrogenase, at 526,608 to 527,774 GFF2818 GFF2819 - Alcohol dehydrogenase, at 527,941 to 528,963 GFF2819 Position (kb) 526 527 528Strain fitness (log2 ratio) -2 -1 0 1 2at 525.667 kb on + strand, within GFF2816at 525.667 kb on + strand, within GFF2816at 525.668 kb on - strand, within GFF2816at 525.668 kb on - strand, within GFF2816at 525.834 kb on + strandat 525.835 kb on - strandat 525.930 kb on + strandat 525.931 kb on - strandat 525.931 kb on - strandat 525.931 kb on - strandat 525.941 kb on + strandat 525.942 kb on - strandat 526.196 kb on + strand, within GFF2817at 526.196 kb on + strand, within GFF2817at 526.291 kb on - strand, within GFF2817at 526.346 kb on + strand, within GFF2817at 526.346 kb on + strand, within GFF2817at 526.346 kb on + strand, within GFF2817at 526.347 kb on - strand, within GFF2817at 526.347 kb on - strand, within GFF2817at 526.347 kb on - strand, within GFF2817at 526.347 kb on - strand, within GFF2817at 526.347 kb on - strand, within GFF2817at 526.454 kb on + strand, within GFF2817at 526.454 kb on + strand, within GFF2817at 526.454 kb on + strand, within GFF2817at 526.455 kb on - strand, within GFF2817at 526.512 kb on - strand, within GFF2817at 526.512 kb on - strand, within GFF2817at 526.512 kb on - strand, within GFF2817at 526.687 kb on + strandat 526.687 kb on + strandat 526.687 kb on + strandat 526.688 kb on - strandat 526.688 kb on - strandat 526.714 kb on + strandat 526.715 kb on - strandat 526.744 kb on + strand, within GFF2818at 526.894 kb on + strand, within GFF2818at 526.894 kb on + strand, within GFF2818at 526.895 kb on - strand, within GFF2818at 526.982 kb on - strand, within GFF2818at 527.148 kb on + strand, within GFF2818at 527.148 kb on + strand, within GFF2818at 527.148 kb on + strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.149 kb on - strand, within GFF2818at 527.335 kb on + strand, within GFF2818at 527.335 kb on + strand, within GFF2818at 527.335 kb on + strand, within GFF2818at 527.336 kb on - strand, within GFF2818at 527.336 kb on - strand, within GFF2818at 527.336 kb on - strand, within GFF2818at 527.336 kb on - strand, within GFF2818at 527.336 kb on - strand, within GFF2818at 527.336 kb on - strand, within GFF2818at 527.449 kb on + strand, within GFF2818at 527.450 kb on - strand, within GFF2818at 527.602 kb on + strand, within GFF2818at 527.602 kb on + strand, within GFF2818at 527.602 kb on + strand, within GFF2818at 527.603 kb on - strand, within GFF2818at 527.603 kb on - strand, within GFF2818at 527.904 kb on - strandat 528.070 kb on + strand, within GFF2819at 528.070 kb on + strand, within GFF2819at 528.070 kb on + strand, within GFF2819at 528.070 kb on + strand, within GFF2819at 528.071 kb on - strand, within GFF2819at 528.071 kb on - strand, within GFF2819at 528.071 kb on - strand, within GFF2819at 528.071 kb on - strand, within GFF2819at 528.071 kb on - strand, within GFF2819at 528.202 kb on + strand, within GFF2819at 528.203 kb on - strand, within GFF2819at 528.203 kb on - strand, within GFF2819at 528.260 kb on - strand, within GFF2819at 528.304 kb on + strand, within GFF2819at 528.304 kb on + strand, within GFF2819at 528.304 kb on + strand, within GFF2819at 528.386 kb on - strand, within GFF2819at 528.476 kb on - strand, within GFF2819at 528.476 kb on - strand, within GFF2819at 528.522 kb on + strand, within GFF2819at 528.584 kb on - strand, within GFF2819

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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525,667 + GFF2816 0.74 +0.9
525,667 + GFF2816 0.74 -1.0
525,668 - GFF2816 0.74 +0.0
525,668 - GFF2816 0.74 +0.2
525,834 + +0.5
525,835 - +0.1
525,930 + -0.9
525,931 - -0.9
525,931 - +0.2
525,931 - -0.3
525,941 + -0.6
525,942 - -0.2
526,196 + GFF2817 0.21 -1.5
526,196 + GFF2817 0.21 +0.4
526,291 - GFF2817 0.38 -2.5
526,346 + GFF2817 0.48 +0.1
526,346 + GFF2817 0.48 -0.7
526,346 + GFF2817 0.48 +0.2
526,347 - GFF2817 0.48 +0.7
526,347 - GFF2817 0.48 +0.7
526,347 - GFF2817 0.48 -1.7
526,347 - GFF2817 0.48 +1.5
526,347 - GFF2817 0.48 -0.9
526,454 + GFF2817 0.67 +0.3
526,454 + GFF2817 0.67 -0.4
526,454 + GFF2817 0.67 +0.2
526,455 - GFF2817 0.67 -0.0
526,512 - GFF2817 0.77 +0.3
526,512 - GFF2817 0.77 +0.5
526,512 - GFF2817 0.77 +0.9
526,687 + +1.7
526,687 + +0.3
526,687 + +0.0
526,688 - -0.4
526,688 - -0.1
526,714 + +1.4
526,715 - +0.4
526,744 + GFF2818 0.12 +1.4
526,894 + GFF2818 0.25 -0.3
526,894 + GFF2818 0.25 -0.8
526,895 - GFF2818 0.25 +0.0
526,982 - GFF2818 0.32 +1.3
527,148 + GFF2818 0.46 -0.3
527,148 + GFF2818 0.46 +0.3
527,148 + GFF2818 0.46 +0.6
527,149 - GFF2818 0.46 -0.0
527,149 - GFF2818 0.46 +0.3
527,149 - GFF2818 0.46 +0.8
527,149 - GFF2818 0.46 +0.2
527,149 - GFF2818 0.46 +0.1
527,149 - GFF2818 0.46 -0.7
527,149 - GFF2818 0.46 -1.0
527,335 + GFF2818 0.62 +0.5
527,335 + GFF2818 0.62 -1.4
527,335 + GFF2818 0.62 -0.2
527,336 - GFF2818 0.62 -0.7
527,336 - GFF2818 0.62 -1.5
527,336 - GFF2818 0.62 +0.0
527,336 - GFF2818 0.62 -0.9
527,336 - GFF2818 0.62 -0.6
527,336 - GFF2818 0.62 -0.3
527,449 + GFF2818 0.72 -0.6
527,450 - GFF2818 0.72 +0.7
527,602 + GFF2818 0.85 +2.0
527,602 + GFF2818 0.85 -0.9
527,602 + GFF2818 0.85 -1.6
527,603 - GFF2818 0.85 +0.2
527,603 - GFF2818 0.85 +0.4
527,904 - -0.2
528,070 + GFF2819 0.13 -0.8
528,070 + GFF2819 0.13 +1.9
528,070 + GFF2819 0.13 +0.4
528,070 + GFF2819 0.13 +0.3
528,071 - GFF2819 0.13 +1.3
528,071 - GFF2819 0.13 +0.3
528,071 - GFF2819 0.13 -0.0
528,071 - GFF2819 0.13 -0.7
528,071 - GFF2819 0.13 -1.7
528,202 + GFF2819 0.26 +0.3
528,203 - GFF2819 0.26 -0.0
528,203 - GFF2819 0.26 +0.1
528,260 - GFF2819 0.31 -0.4
528,304 + GFF2819 0.35 +0.3
528,304 + GFF2819 0.35 -0.3
528,304 + GFF2819 0.35 -0.0
528,386 - GFF2819 0.43 +1.7
528,476 - GFF2819 0.52 -0.8
528,476 - GFF2819 0.52 -1.0
528,522 + GFF2819 0.57 -0.0
528,584 - GFF2819 0.63 -0.5

Or see this region's nucleotide sequence