Strain Fitness in Xanthobacter sp. DMC5 around GFF2812

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2811 and GFF2812 are separated by 94 nucleotidesGFF2812 and GFF2813 are separated by 37 nucleotides GFF2811 - Electron transfer flavoprotein-ubiquinone oxidoreductase, at 517,433 to 519,085 GFF2811 GFF2812 - Fatty acid oxidation complex subunit alpha, at 519,180 to 521,237 GFF2812 GFF2813 - Medium-chain fatty-acid--CoA ligase, at 521,275 to 522,933 GFF2813 Position (kb) 519 520 521 522Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 518.265 kb on + strand, within GFF2811at 518.266 kb on - strand, within GFF2811at 518.278 kb on - strand, within GFF2811at 518.290 kb on - strand, within GFF2811at 518.340 kb on + strand, within GFF2811at 518.547 kb on + strand, within GFF2811at 518.547 kb on + strand, within GFF2811at 518.547 kb on + strand, within GFF2811at 518.547 kb on + strand, within GFF2811at 518.547 kb on + strand, within GFF2811at 518.547 kb on + strand, within GFF2811at 518.547 kb on + strand, within GFF2811at 518.548 kb on - strand, within GFF2811at 518.578 kb on - strand, within GFF2811at 518.655 kb on + strand, within GFF2811at 518.655 kb on + strand, within GFF2811at 518.656 kb on - strand, within GFF2811at 518.754 kb on + strand, within GFF2811at 518.754 kb on + strand, within GFF2811at 518.754 kb on + strand, within GFF2811at 518.754 kb on + strand, within GFF2811at 518.755 kb on - strand, within GFF2811at 518.755 kb on - strand, within GFF2811at 518.755 kb on - strand, within GFF2811at 519.048 kb on + strandat 519.054 kb on + strandat 519.054 kb on + strandat 519.054 kb on + strandat 519.054 kb on + strandat 519.055 kb on - strandat 519.055 kb on - strandat 519.087 kb on + strandat 519.322 kb on + strandat 519.323 kb on - strandat 519.566 kb on - strand, within GFF2812at 519.640 kb on + strand, within GFF2812at 519.641 kb on - strand, within GFF2812at 519.641 kb on - strand, within GFF2812at 519.641 kb on - strand, within GFF2812at 519.688 kb on + strand, within GFF2812at 519.689 kb on - strand, within GFF2812at 519.724 kb on + strand, within GFF2812at 519.724 kb on + strand, within GFF2812at 519.724 kb on + strand, within GFF2812at 519.725 kb on - strand, within GFF2812at 519.725 kb on - strand, within GFF2812at 519.725 kb on - strand, within GFF2812at 519.912 kb on + strand, within GFF2812at 519.913 kb on - strand, within GFF2812at 519.913 kb on - strand, within GFF2812at 519.942 kb on + strand, within GFF2812at 519.943 kb on - strand, within GFF2812at 520.046 kb on - strand, within GFF2812at 520.046 kb on - strand, within GFF2812at 520.046 kb on - strand, within GFF2812at 520.046 kb on - strand, within GFF2812at 520.124 kb on + strand, within GFF2812at 520.125 kb on - strand, within GFF2812at 520.125 kb on - strand, within GFF2812at 520.144 kb on - strand, within GFF2812at 520.144 kb on - strand, within GFF2812at 520.174 kb on + strand, within GFF2812at 520.370 kb on + strand, within GFF2812at 520.370 kb on + strand, within GFF2812at 521.101 kb on - strandat 521.294 kb on + strandat 521.295 kb on - strandat 521.295 kb on - strandat 521.390 kb on + strandat 521.391 kb on - strandat 521.391 kb on - strandat 521.546 kb on + strand, within GFF2813at 521.546 kb on + strand, within GFF2813at 521.546 kb on + strand, within GFF2813at 521.547 kb on - strand, within GFF2813at 521.547 kb on - strand, within GFF2813at 521.547 kb on - strand, within GFF2813at 521.547 kb on - strand, within GFF2813at 521.547 kb on - strand, within GFF2813at 521.630 kb on + strand, within GFF2813at 521.630 kb on + strand, within GFF2813at 521.630 kb on + strand, within GFF2813at 521.630 kb on + strand, within GFF2813at 521.631 kb on - strand, within GFF2813at 521.631 kb on - strand, within GFF2813at 521.631 kb on - strand, within GFF2813at 521.666 kb on + strand, within GFF2813at 521.715 kb on - strand, within GFF2813at 521.832 kb on + strand, within GFF2813at 522.167 kb on + strand, within GFF2813at 522.167 kb on + strand, within GFF2813at 522.167 kb on + strand, within GFF2813at 522.167 kb on + strand, within GFF2813at 522.168 kb on - strand, within GFF2813at 522.168 kb on - strand, within GFF2813at 522.168 kb on - strand, within GFF2813at 522.168 kb on - strand, within GFF2813at 522.168 kb on - strand, within GFF2813

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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518,265 + GFF2811 0.50 -0.7
518,266 - GFF2811 0.50 -0.7
518,278 - GFF2811 0.51 -2.5
518,290 - GFF2811 0.52 -0.7
518,340 + GFF2811 0.55 +0.6
518,547 + GFF2811 0.67 -1.0
518,547 + GFF2811 0.67 +1.3
518,547 + GFF2811 0.67 -0.0
518,547 + GFF2811 0.67 +0.1
518,547 + GFF2811 0.67 -0.7
518,547 + GFF2811 0.67 +0.2
518,547 + GFF2811 0.67 +0.7
518,548 - GFF2811 0.67 -0.7
518,578 - GFF2811 0.69 +0.3
518,655 + GFF2811 0.74 -0.2
518,655 + GFF2811 0.74 -0.5
518,656 - GFF2811 0.74 -0.4
518,754 + GFF2811 0.80 -0.4
518,754 + GFF2811 0.80 -1.2
518,754 + GFF2811 0.80 +0.0
518,754 + GFF2811 0.80 +0.4
518,755 - GFF2811 0.80 +1.4
518,755 - GFF2811 0.80 -0.0
518,755 - GFF2811 0.80 -0.1
519,048 + -0.2
519,054 + +0.7
519,054 + -0.4
519,054 + -1.9
519,054 + +0.1
519,055 - +0.0
519,055 - -0.8
519,087 + +2.0
519,322 + +0.3
519,323 - -0.7
519,566 - GFF2812 0.19 +0.2
519,640 + GFF2812 0.22 +0.2
519,641 - GFF2812 0.22 +0.6
519,641 - GFF2812 0.22 +0.2
519,641 - GFF2812 0.22 +0.6
519,688 + GFF2812 0.25 +2.3
519,689 - GFF2812 0.25 +0.3
519,724 + GFF2812 0.26 -0.4
519,724 + GFF2812 0.26 -1.4
519,724 + GFF2812 0.26 -0.4
519,725 - GFF2812 0.26 -1.3
519,725 - GFF2812 0.26 -0.7
519,725 - GFF2812 0.26 -0.5
519,912 + GFF2812 0.36 +0.1
519,913 - GFF2812 0.36 +0.4
519,913 - GFF2812 0.36 +0.4
519,942 + GFF2812 0.37 +0.2
519,943 - GFF2812 0.37 -0.4
520,046 - GFF2812 0.42 -0.0
520,046 - GFF2812 0.42 -0.5
520,046 - GFF2812 0.42 +0.5
520,046 - GFF2812 0.42 -0.7
520,124 + GFF2812 0.46 -0.4
520,125 - GFF2812 0.46 +0.0
520,125 - GFF2812 0.46 +0.5
520,144 - GFF2812 0.47 +0.0
520,144 - GFF2812 0.47 -0.0
520,174 + GFF2812 0.48 -1.0
520,370 + GFF2812 0.58 -0.5
520,370 + GFF2812 0.58 -0.9
521,101 - +0.1
521,294 + -0.6
521,295 - +0.5
521,295 - -1.3
521,390 + -0.3
521,391 - -1.5
521,391 - +1.0
521,546 + GFF2813 0.16 -0.7
521,546 + GFF2813 0.16 -0.9
521,546 + GFF2813 0.16 +0.7
521,547 - GFF2813 0.16 +0.1
521,547 - GFF2813 0.16 +0.2
521,547 - GFF2813 0.16 -0.9
521,547 - GFF2813 0.16 -0.2
521,547 - GFF2813 0.16 +0.2
521,630 + GFF2813 0.21 -0.4
521,630 + GFF2813 0.21 +1.0
521,630 + GFF2813 0.21 +0.5
521,630 + GFF2813 0.21 +0.1
521,631 - GFF2813 0.21 -0.7
521,631 - GFF2813 0.21 -0.5
521,631 - GFF2813 0.21 -0.5
521,666 + GFF2813 0.24 -0.3
521,715 - GFF2813 0.27 -0.7
521,832 + GFF2813 0.34 +0.3
522,167 + GFF2813 0.54 -0.8
522,167 + GFF2813 0.54 -0.5
522,167 + GFF2813 0.54 -3.0
522,167 + GFF2813 0.54 -0.1
522,168 - GFF2813 0.54 -0.2
522,168 - GFF2813 0.54 -0.9
522,168 - GFF2813 0.54 +1.4
522,168 - GFF2813 0.54 -0.3
522,168 - GFF2813 0.54 +0.1

Or see this region's nucleotide sequence