Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF279 and GFF280 are separated by 191 nucleotides GFF280 and GFF281 are separated by 71 nucleotides GFF281 and GFF282 are separated by 106 nucleotides GFF282 and GFF283 overlap by 8 nucleotides
GFF279 - Allophanate hydrolase, at 293,689 to 295,473
GFF279
GFF280 - hypothetical protein, at 295,665 to 295,883
GFF280
GFF281 - Formyltetrahydrofolate deformylase, at 295,955 to 296,824
GFF281
GFF282 - hypothetical protein, at 296,931 to 297,539
GFF282
GFF283 - Sarcosine oxidase subunit alpha, at 297,532 to 300,486
GFF283
Position (kb) 295
296
297 Strain fitness (log2 ratio) -2
-1
0
1 at 295.086 kb on - strand, within GFF279 at 295.203 kb on - strand, within GFF279 at 295.203 kb on - strand, within GFF279 at 295.251 kb on + strand, within GFF279 at 295.397 kb on + strand at 295.398 kb on - strand at 295.478 kb on + strand at 296.835 kb on + strand at 296.835 kb on + strand at 296.836 kb on - strand at 296.965 kb on + strand at 296.965 kb on + strand at 296.966 kb on - strand at 296.966 kb on - strand at 297.035 kb on - strand, within GFF282 at 297.580 kb on + strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.581 kb on - strand at 297.617 kb on + strand at 297.698 kb on + strand at 297.699 kb on - strand at 297.699 kb on - strand at 297.716 kb on + strand at 297.716 kb on + strand at 297.716 kb on + strand at 297.717 kb on - strand at 297.717 kb on - strand at 297.717 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 295,086 - GFF279 0.78 -0.1 295,203 - GFF279 0.85 +0.1 295,203 - GFF279 0.85 +1.1 295,251 + GFF279 0.88 -0.6 295,397 + -0.0 295,398 - -0.4 295,478 + +0.1 296,835 + -0.4 296,835 + -0.3 296,836 - +0.2 296,965 + -1.1 296,965 + +0.1 296,966 - -0.2 296,966 - -0.4 297,035 - GFF282 0.17 -0.0 297,580 + +0.3 297,581 - -0.7 297,581 - -0.3 297,581 - -1.3 297,581 - -0.3 297,581 - -1.7 297,581 - -0.6 297,581 - -0.3 297,581 - -0.6 297,581 - -2.2 297,581 - +0.1 297,617 + +1.3 297,698 + +1.0 297,699 - +0.3 297,699 - -0.3 297,716 + +1.3 297,716 + -0.5 297,716 + +0.1 297,717 - -1.4 297,717 - -0.2 297,717 - -1.1
Or see this region's nucleotide sequence