Strain Fitness in Xanthobacter sp. DMC5 around GFF280

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF279 and GFF280 are separated by 191 nucleotidesGFF280 and GFF281 are separated by 71 nucleotides GFF279 - Allophanate hydrolase, at 293,689 to 295,473 GFF279 GFF280 - hypothetical protein, at 295,665 to 295,883 GFF280 GFF281 - Formyltetrahydrofolate deformylase, at 295,955 to 296,824 GFF281 Position (kb) 295 296Strain fitness (log2 ratio) -1 0 1at 294.782 kb on + strand, within GFF279at 294.783 kb on - strand, within GFF279at 294.898 kb on - strand, within GFF279at 295.086 kb on - strand, within GFF279at 295.203 kb on - strand, within GFF279at 295.203 kb on - strand, within GFF279at 295.251 kb on + strand, within GFF279at 295.397 kb on + strandat 295.398 kb on - strandat 295.478 kb on + strandat 296.835 kb on + strandat 296.835 kb on + strandat 296.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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294,782 + GFF279 0.61 +0.3
294,783 - GFF279 0.61 +0.4
294,898 - GFF279 0.68 -0.7
295,086 - GFF279 0.78 -0.1
295,203 - GFF279 0.85 +0.1
295,203 - GFF279 0.85 +1.1
295,251 + GFF279 0.88 -0.6
295,397 + -0.0
295,398 - -0.4
295,478 + +0.1
296,835 + -0.4
296,835 + -0.3
296,836 - +0.2

Or see this region's nucleotide sequence