Strain Fitness in Xanthobacter sp. DMC5 around GFF2794

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2793 and GFF2794 are separated by 222 nucleotidesGFF2794 and GFF2795 are separated by 127 nucleotides GFF2793 - ATP-dependent RNA helicase DeaD, at 496,533 to 498,413 GFF2793 GFF2794 - hypothetical protein, at 498,636 to 499,463 GFF2794 GFF2795 - hypothetical protein, at 499,591 to 500,436 GFF2795 Position (kb) 498 499 500Strain fitness (log2 ratio) -2 -1 0 1 2at 497.692 kb on + strand, within GFF2793at 497.692 kb on + strand, within GFF2793at 497.692 kb on + strand, within GFF2793at 497.693 kb on - strand, within GFF2793at 497.695 kb on + strand, within GFF2793at 497.695 kb on + strand, within GFF2793at 497.696 kb on - strand, within GFF2793at 497.696 kb on - strand, within GFF2793at 497.700 kb on + strand, within GFF2793at 497.700 kb on + strand, within GFF2793at 497.700 kb on + strand, within GFF2793at 497.700 kb on + strand, within GFF2793at 497.700 kb on + strand, within GFF2793at 497.701 kb on - strand, within GFF2793at 497.701 kb on - strand, within GFF2793at 497.701 kb on - strand, within GFF2793at 497.701 kb on - strand, within GFF2793at 497.701 kb on - strand, within GFF2793at 497.756 kb on - strand, within GFF2793at 497.818 kb on + strand, within GFF2793at 497.819 kb on - strand, within GFF2793at 498.125 kb on - strand, within GFF2793at 498.359 kb on - strandat 498.428 kb on - strandat 498.437 kb on + strandat 498.488 kb on + strandat 498.488 kb on + strandat 498.488 kb on + strandat 498.489 kb on - strandat 498.491 kb on + strandat 498.506 kb on + strandat 498.507 kb on - strandat 498.531 kb on + strandat 498.531 kb on + strandat 498.531 kb on + strandat 498.531 kb on + strandat 498.531 kb on + strandat 498.532 kb on - strandat 498.532 kb on - strandat 498.637 kb on + strandat 498.637 kb on + strandat 498.638 kb on - strandat 498.670 kb on - strandat 498.768 kb on + strand, within GFF2794at 498.768 kb on + strand, within GFF2794at 498.768 kb on + strand, within GFF2794at 498.769 kb on - strand, within GFF2794at 498.873 kb on - strand, within GFF2794at 498.991 kb on + strand, within GFF2794at 498.992 kb on - strand, within GFF2794at 499.055 kb on - strand, within GFF2794at 499.108 kb on + strand, within GFF2794at 499.108 kb on + strand, within GFF2794at 499.108 kb on + strand, within GFF2794at 499.198 kb on + strand, within GFF2794at 499.199 kb on - strand, within GFF2794at 499.199 kb on - strand, within GFF2794at 499.267 kb on + strand, within GFF2794at 499.267 kb on + strand, within GFF2794at 499.267 kb on + strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.268 kb on - strand, within GFF2794at 499.300 kb on + strand, within GFF2794at 499.301 kb on - strand, within GFF2794at 499.522 kb on + strandat 499.523 kb on - strandat 499.523 kb on - strandat 499.523 kb on - strandat 499.523 kb on - strandat 499.592 kb on + strandat 499.763 kb on + strand, within GFF2795at 499.763 kb on + strand, within GFF2795at 499.763 kb on + strand, within GFF2795at 499.763 kb on + strand, within GFF2795at 499.980 kb on - strand, within GFF2795at 499.980 kb on - strand, within GFF2795at 500.069 kb on + strand, within GFF2795at 500.136 kb on - strand, within GFF2795at 500.199 kb on - strand, within GFF2795at 500.199 kb on - strand, within GFF2795at 500.199 kb on - strand, within GFF2795at 500.397 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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497,692 + GFF2793 0.62 -0.3
497,692 + GFF2793 0.62 +1.2
497,692 + GFF2793 0.62 -0.2
497,693 - GFF2793 0.62 +0.8
497,695 + GFF2793 0.62 -1.8
497,695 + GFF2793 0.62 +0.7
497,696 - GFF2793 0.62 +1.9
497,696 - GFF2793 0.62 -0.2
497,700 + GFF2793 0.62 -0.0
497,700 + GFF2793 0.62 +0.9
497,700 + GFF2793 0.62 -0.3
497,700 + GFF2793 0.62 +0.9
497,700 + GFF2793 0.62 -0.4
497,701 - GFF2793 0.62 -1.4
497,701 - GFF2793 0.62 -2.2
497,701 - GFF2793 0.62 +0.9
497,701 - GFF2793 0.62 -0.2
497,701 - GFF2793 0.62 +0.7
497,756 - GFF2793 0.65 -1.7
497,818 + GFF2793 0.68 -0.4
497,819 - GFF2793 0.68 +0.1
498,125 - GFF2793 0.85 +0.8
498,359 - +0.3
498,428 - -1.6
498,437 + -1.6
498,488 + +0.8
498,488 + -0.4
498,488 + +0.3
498,489 - +0.9
498,491 + -1.7
498,506 + -0.2
498,507 - -0.5
498,531 + -0.2
498,531 + +1.3
498,531 + -0.0
498,531 + -2.0
498,531 + +0.5
498,532 - -0.6
498,532 - -0.2
498,637 + +0.3
498,637 + +0.5
498,638 - -1.0
498,670 - +1.5
498,768 + GFF2794 0.16 +1.5
498,768 + GFF2794 0.16 +0.2
498,768 + GFF2794 0.16 -0.8
498,769 - GFF2794 0.16 -1.5
498,873 - GFF2794 0.29 +0.9
498,991 + GFF2794 0.43 +0.1
498,992 - GFF2794 0.43 +0.1
499,055 - GFF2794 0.51 +0.4
499,108 + GFF2794 0.57 +1.0
499,108 + GFF2794 0.57 +0.0
499,108 + GFF2794 0.57 -1.0
499,198 + GFF2794 0.68 +1.1
499,199 - GFF2794 0.68 -0.9
499,199 - GFF2794 0.68 +0.4
499,267 + GFF2794 0.76 +0.0
499,267 + GFF2794 0.76 +0.5
499,267 + GFF2794 0.76 +0.2
499,268 - GFF2794 0.76 -0.3
499,268 - GFF2794 0.76 -0.2
499,268 - GFF2794 0.76 +0.2
499,268 - GFF2794 0.76 -0.7
499,268 - GFF2794 0.76 -1.4
499,268 - GFF2794 0.76 +1.6
499,268 - GFF2794 0.76 -0.0
499,300 + GFF2794 0.80 -0.4
499,301 - GFF2794 0.80 -0.1
499,522 + +1.0
499,523 - -0.7
499,523 - -0.6
499,523 - +0.5
499,523 - -0.6
499,592 + -0.3
499,763 + GFF2795 0.20 +0.1
499,763 + GFF2795 0.20 -0.5
499,763 + GFF2795 0.20 +0.5
499,763 + GFF2795 0.20 +0.7
499,980 - GFF2795 0.46 +0.4
499,980 - GFF2795 0.46 -0.5
500,069 + GFF2795 0.57 +0.3
500,136 - GFF2795 0.64 -0.1
500,199 - GFF2795 0.72 +0.3
500,199 - GFF2795 0.72 +0.2
500,199 - GFF2795 0.72 +1.3
500,397 - +0.7

Or see this region's nucleotide sequence