Strain Fitness in Xanthobacter sp. DMC5 around GFF2772

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2771 and GFF2772 overlap by 4 nucleotidesGFF2772 and GFF2773 are separated by 186 nucleotides GFF2771 - hypothetical protein, at 472,918 to 474,348 GFF2771 GFF2772 - HTH-type transcriptional regulator HdfR, at 474,345 to 475,232 GFF2772 GFF2773 - 3-hydroxyisobutyrate dehydrogenase, at 475,419 to 476,312 GFF2773 Position (kb) 474 475 476Strain fitness (log2 ratio) -2 -1 0 1 2at 473.370 kb on + strand, within GFF2771at 473.370 kb on + strand, within GFF2771at 473.371 kb on - strand, within GFF2771at 473.631 kb on - strand, within GFF2771at 473.631 kb on - strand, within GFF2771at 473.710 kb on + strand, within GFF2771at 473.710 kb on + strand, within GFF2771at 473.711 kb on - strand, within GFF2771at 473.711 kb on - strand, within GFF2771at 473.711 kb on - strand, within GFF2771at 473.996 kb on - strand, within GFF2771at 473.996 kb on - strand, within GFF2771at 473.996 kb on - strand, within GFF2771at 473.996 kb on - strand, within GFF2771at 474.017 kb on - strand, within GFF2771at 474.084 kb on - strand, within GFF2771at 474.084 kb on - strand, within GFF2771at 474.084 kb on - strand, within GFF2771at 474.148 kb on + strand, within GFF2771at 474.148 kb on + strand, within GFF2771at 474.148 kb on + strand, within GFF2771at 474.149 kb on - strand, within GFF2771at 474.149 kb on - strand, within GFF2771at 474.210 kb on + strandat 474.252 kb on + strandat 474.252 kb on + strandat 474.253 kb on - strandat 474.253 kb on - strandat 474.253 kb on - strandat 474.253 kb on - strandat 474.257 kb on - strandat 474.314 kb on + strandat 474.314 kb on + strandat 474.314 kb on + strandat 474.315 kb on - strandat 474.333 kb on - strandat 474.347 kb on - strandat 474.452 kb on - strand, within GFF2772at 474.452 kb on - strand, within GFF2772at 474.452 kb on - strand, within GFF2772at 474.452 kb on - strand, within GFF2772at 474.452 kb on - strand, within GFF2772at 474.517 kb on + strand, within GFF2772at 474.517 kb on + strand, within GFF2772at 474.518 kb on - strand, within GFF2772at 474.518 kb on - strand, within GFF2772at 474.661 kb on + strand, within GFF2772at 474.661 kb on + strand, within GFF2772at 474.661 kb on + strand, within GFF2772at 474.662 kb on - strand, within GFF2772at 474.662 kb on - strand, within GFF2772at 474.724 kb on + strand, within GFF2772at 474.724 kb on + strand, within GFF2772at 474.725 kb on - strand, within GFF2772at 474.725 kb on - strand, within GFF2772at 474.725 kb on - strand, within GFF2772at 474.739 kb on + strand, within GFF2772at 474.739 kb on + strand, within GFF2772at 474.739 kb on + strand, within GFF2772at 474.740 kb on - strand, within GFF2772at 474.755 kb on - strand, within GFF2772at 474.755 kb on - strand, within GFF2772at 474.760 kb on + strand, within GFF2772at 474.778 kb on + strand, within GFF2772at 474.778 kb on + strand, within GFF2772at 474.779 kb on - strand, within GFF2772at 474.932 kb on - strand, within GFF2772at 475.255 kb on + strandat 475.256 kb on - strandat 475.266 kb on + strandat 475.267 kb on - strandat 475.309 kb on + strandat 475.309 kb on + strandat 475.417 kb on + strandat 475.417 kb on + strandat 475.417 kb on + strandat 475.418 kb on - strandat 475.642 kb on - strand, within GFF2773at 475.987 kb on - strand, within GFF2773at 476.122 kb on - strand, within GFF2773at 476.122 kb on - strand, within GFF2773at 476.232 kb on + strandat 476.232 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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473,370 + GFF2771 0.32 +0.3
473,370 + GFF2771 0.32 -0.0
473,371 - GFF2771 0.32 +0.3
473,631 - GFF2771 0.50 +0.7
473,631 - GFF2771 0.50 -0.1
473,710 + GFF2771 0.55 -1.0
473,710 + GFF2771 0.55 -0.7
473,711 - GFF2771 0.55 +1.5
473,711 - GFF2771 0.55 -0.9
473,711 - GFF2771 0.55 +1.8
473,996 - GFF2771 0.75 -0.7
473,996 - GFF2771 0.75 -0.6
473,996 - GFF2771 0.75 +0.2
473,996 - GFF2771 0.75 -1.1
474,017 - GFF2771 0.77 +1.0
474,084 - GFF2771 0.81 -0.7
474,084 - GFF2771 0.81 +0.6
474,084 - GFF2771 0.81 +1.0
474,148 + GFF2771 0.86 -1.3
474,148 + GFF2771 0.86 -0.1
474,148 + GFF2771 0.86 -0.5
474,149 - GFF2771 0.86 -0.9
474,149 - GFF2771 0.86 +0.5
474,210 + +0.5
474,252 + +0.3
474,252 + -0.4
474,253 - -0.2
474,253 - +0.4
474,253 - +0.4
474,253 - +1.0
474,257 - +0.4
474,314 + +0.2
474,314 + +0.0
474,314 + +1.0
474,315 - -0.1
474,333 - +0.1
474,347 - -0.4
474,452 - GFF2772 0.12 +0.5
474,452 - GFF2772 0.12 -0.3
474,452 - GFF2772 0.12 +0.1
474,452 - GFF2772 0.12 -0.0
474,452 - GFF2772 0.12 +0.8
474,517 + GFF2772 0.19 -0.1
474,517 + GFF2772 0.19 +0.1
474,518 - GFF2772 0.19 +1.6
474,518 - GFF2772 0.19 -0.5
474,661 + GFF2772 0.36 -0.3
474,661 + GFF2772 0.36 +0.4
474,661 + GFF2772 0.36 +0.0
474,662 - GFF2772 0.36 -2.0
474,662 - GFF2772 0.36 -0.1
474,724 + GFF2772 0.43 +0.9
474,724 + GFF2772 0.43 -0.5
474,725 - GFF2772 0.43 -0.4
474,725 - GFF2772 0.43 +0.9
474,725 - GFF2772 0.43 -0.7
474,739 + GFF2772 0.44 +0.4
474,739 + GFF2772 0.44 +0.5
474,739 + GFF2772 0.44 +0.1
474,740 - GFF2772 0.44 -0.3
474,755 - GFF2772 0.46 -0.1
474,755 - GFF2772 0.46 -0.2
474,760 + GFF2772 0.47 -0.4
474,778 + GFF2772 0.49 +0.0
474,778 + GFF2772 0.49 -0.5
474,779 - GFF2772 0.49 +0.7
474,932 - GFF2772 0.66 -0.1
475,255 + -1.0
475,256 - -0.7
475,266 + +0.2
475,267 - +0.3
475,309 + +0.3
475,309 + -0.3
475,417 + -1.2
475,417 + -0.6
475,417 + +0.4
475,418 - +0.8
475,642 - GFF2773 0.25 -0.1
475,987 - GFF2773 0.64 +1.3
476,122 - GFF2773 0.79 -0.7
476,122 - GFF2773 0.79 +0.0
476,232 + -0.9
476,232 + -0.9

Or see this region's nucleotide sequence