Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2763 and GFF2764 are separated by 190 nucleotides GFF2764 and GFF2765 are separated by 314 nucleotides
GFF2763 - 2,3-dimethylmalate lyase, at 463,957 to 464,826
GFF2763
GFF2764 - HTH-type transcriptional regulator McbR, at 465,017 to 465,772
GFF2764
GFF2765 - hypothetical protein, at 466,087 to 467,295
GFF2765
Position (kb) 465
466 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 464.096 kb on + strand, within GFF2763 at 464.096 kb on + strand, within GFF2763 at 464.096 kb on + strand, within GFF2763 at 464.097 kb on - strand, within GFF2763 at 464.097 kb on - strand, within GFF2763 at 464.097 kb on - strand, within GFF2763 at 464.097 kb on - strand, within GFF2763 at 464.097 kb on - strand, within GFF2763 at 464.135 kb on + strand, within GFF2763 at 464.135 kb on + strand, within GFF2763 at 464.136 kb on - strand, within GFF2763 at 464.136 kb on - strand, within GFF2763 at 464.136 kb on - strand, within GFF2763 at 464.208 kb on + strand, within GFF2763 at 464.209 kb on - strand, within GFF2763 at 464.450 kb on + strand, within GFF2763 at 464.685 kb on + strand, within GFF2763 at 464.685 kb on + strand, within GFF2763 at 464.685 kb on + strand, within GFF2763 at 464.708 kb on + strand, within GFF2763 at 464.708 kb on + strand, within GFF2763 at 464.708 kb on + strand, within GFF2763 at 464.708 kb on + strand, within GFF2763 at 464.709 kb on - strand, within GFF2763 at 464.709 kb on - strand, within GFF2763 at 464.709 kb on - strand, within GFF2763 at 464.709 kb on - strand, within GFF2763 at 464.709 kb on - strand, within GFF2763 at 464.709 kb on - strand, within GFF2763 at 464.709 kb on - strand, within GFF2763 at 464.865 kb on + strand at 464.865 kb on + strand at 464.944 kb on + strand at 464.945 kb on - strand at 465.147 kb on - strand, within GFF2764 at 465.430 kb on + strand, within GFF2764 at 465.449 kb on + strand, within GFF2764 at 465.449 kb on + strand, within GFF2764 at 465.542 kb on + strand, within GFF2764 at 465.542 kb on + strand, within GFF2764 at 465.543 kb on - strand, within GFF2764 at 465.543 kb on - strand, within GFF2764 at 465.546 kb on - strand, within GFF2764 at 465.846 kb on - strand at 465.956 kb on + strand at 465.956 kb on + strand at 465.957 kb on - strand at 465.957 kb on - strand at 466.073 kb on + strand at 466.074 kb on - strand at 466.074 kb on - strand at 466.074 kb on - strand at 466.175 kb on + strand at 466.176 kb on - strand at 466.360 kb on + strand, within GFF2765 at 466.360 kb on + strand, within GFF2765 at 466.360 kb on + strand, within GFF2765 at 466.361 kb on - strand, within GFF2765 at 466.592 kb on - strand, within GFF2765 at 466.592 kb on - strand, within GFF2765 at 466.592 kb on - strand, within GFF2765 at 466.626 kb on + strand, within GFF2765 at 466.626 kb on + strand, within GFF2765 at 466.627 kb on - strand, within GFF2765 at 466.627 kb on - strand, within GFF2765 at 466.627 kb on - strand, within GFF2765
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 464,096 + GFF2763 0.16 -0.9 464,096 + GFF2763 0.16 -0.2 464,096 + GFF2763 0.16 -0.5 464,097 - GFF2763 0.16 -1.1 464,097 - GFF2763 0.16 +1.1 464,097 - GFF2763 0.16 +1.1 464,097 - GFF2763 0.16 +0.0 464,097 - GFF2763 0.16 -2.1 464,135 + GFF2763 0.20 -1.3 464,135 + GFF2763 0.20 +0.0 464,136 - GFF2763 0.21 +0.7 464,136 - GFF2763 0.21 +0.2 464,136 - GFF2763 0.21 +0.1 464,208 + GFF2763 0.29 -0.2 464,209 - GFF2763 0.29 -0.5 464,450 + GFF2763 0.57 +0.9 464,685 + GFF2763 0.84 -1.1 464,685 + GFF2763 0.84 -0.5 464,685 + GFF2763 0.84 -0.9 464,708 + GFF2763 0.86 +1.3 464,708 + GFF2763 0.86 -0.4 464,708 + GFF2763 0.86 +0.0 464,708 + GFF2763 0.86 -0.5 464,709 - GFF2763 0.86 -0.0 464,709 - GFF2763 0.86 -0.4 464,709 - GFF2763 0.86 -0.2 464,709 - GFF2763 0.86 +0.9 464,709 - GFF2763 0.86 +0.9 464,709 - GFF2763 0.86 -1.0 464,709 - GFF2763 0.86 +1.0 464,865 + +0.7 464,865 + -0.2 464,944 + +0.7 464,945 - -0.7 465,147 - GFF2764 0.17 -0.3 465,430 + GFF2764 0.55 +1.5 465,449 + GFF2764 0.57 +0.4 465,449 + GFF2764 0.57 -0.2 465,542 + GFF2764 0.69 -1.0 465,542 + GFF2764 0.69 +0.9 465,543 - GFF2764 0.70 -1.1 465,543 - GFF2764 0.70 -2.9 465,546 - GFF2764 0.70 +0.5 465,846 - +0.8 465,956 + -1.3 465,956 + -0.8 465,957 - -0.6 465,957 - -1.7 466,073 + +1.4 466,074 - +0.0 466,074 - -0.7 466,074 - -0.0 466,175 + +0.3 466,176 - -0.6 466,360 + GFF2765 0.23 -0.5 466,360 + GFF2765 0.23 -0.3 466,360 + GFF2765 0.23 +0.1 466,361 - GFF2765 0.23 +0.2 466,592 - GFF2765 0.42 +0.5 466,592 - GFF2765 0.42 -0.1 466,592 - GFF2765 0.42 +0.3 466,626 + GFF2765 0.45 +0.4 466,626 + GFF2765 0.45 +0.7 466,627 - GFF2765 0.45 -0.2 466,627 - GFF2765 0.45 -1.9 466,627 - GFF2765 0.45 -0.7
Or see this region's nucleotide sequence