Strain Fitness in Xanthobacter sp. DMC5 around GFF2763

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2762 and GFF2763 are separated by 84 nucleotidesGFF2763 and GFF2764 are separated by 190 nucleotides GFF2762 - hypothetical protein, at 462,907 to 463,872 GFF2762 GFF2763 - 2,3-dimethylmalate lyase, at 463,957 to 464,826 GFF2763 GFF2764 - HTH-type transcriptional regulator McbR, at 465,017 to 465,772 GFF2764 Position (kb) 463 464 465Strain fitness (log2 ratio) -3 -2 -1 0 1at 463.059 kb on + strand, within GFF2762at 463.060 kb on - strand, within GFF2762at 463.060 kb on - strand, within GFF2762at 463.148 kb on + strand, within GFF2762at 463.149 kb on - strand, within GFF2762at 463.149 kb on - strand, within GFF2762at 463.149 kb on - strand, within GFF2762at 463.164 kb on - strand, within GFF2762at 463.164 kb on - strand, within GFF2762at 463.164 kb on - strand, within GFF2762at 463.307 kb on + strand, within GFF2762at 463.307 kb on + strand, within GFF2762at 463.307 kb on + strand, within GFF2762at 463.308 kb on - strand, within GFF2762at 463.308 kb on - strand, within GFF2762at 463.308 kb on - strand, within GFF2762at 463.344 kb on - strand, within GFF2762at 463.488 kb on - strand, within GFF2762at 463.560 kb on + strand, within GFF2762at 463.560 kb on + strand, within GFF2762at 463.561 kb on - strand, within GFF2762at 463.676 kb on + strand, within GFF2762at 463.676 kb on + strand, within GFF2762at 463.710 kb on - strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.757 kb on + strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.758 kb on - strand, within GFF2762at 463.849 kb on + strandat 463.850 kb on - strandat 464.096 kb on + strand, within GFF2763at 464.096 kb on + strand, within GFF2763at 464.096 kb on + strand, within GFF2763at 464.097 kb on - strand, within GFF2763at 464.097 kb on - strand, within GFF2763at 464.097 kb on - strand, within GFF2763at 464.097 kb on - strand, within GFF2763at 464.097 kb on - strand, within GFF2763at 464.135 kb on + strand, within GFF2763at 464.135 kb on + strand, within GFF2763at 464.136 kb on - strand, within GFF2763at 464.136 kb on - strand, within GFF2763at 464.136 kb on - strand, within GFF2763at 464.208 kb on + strand, within GFF2763at 464.209 kb on - strand, within GFF2763at 464.450 kb on + strand, within GFF2763at 464.685 kb on + strand, within GFF2763at 464.685 kb on + strand, within GFF2763at 464.685 kb on + strand, within GFF2763at 464.708 kb on + strand, within GFF2763at 464.708 kb on + strand, within GFF2763at 464.708 kb on + strand, within GFF2763at 464.708 kb on + strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.709 kb on - strand, within GFF2763at 464.865 kb on + strandat 464.865 kb on + strandat 464.944 kb on + strandat 464.945 kb on - strandat 465.147 kb on - strand, within GFF2764at 465.430 kb on + strand, within GFF2764at 465.449 kb on + strand, within GFF2764at 465.449 kb on + strand, within GFF2764at 465.542 kb on + strand, within GFF2764at 465.542 kb on + strand, within GFF2764at 465.543 kb on - strand, within GFF2764at 465.543 kb on - strand, within GFF2764at 465.546 kb on - strand, within GFF2764

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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463,059 + GFF2762 0.16 -0.1
463,060 - GFF2762 0.16 +0.8
463,060 - GFF2762 0.16 -1.2
463,148 + GFF2762 0.25 -0.3
463,149 - GFF2762 0.25 +0.0
463,149 - GFF2762 0.25 +0.9
463,149 - GFF2762 0.25 -0.1
463,164 - GFF2762 0.27 -0.5
463,164 - GFF2762 0.27 +0.9
463,164 - GFF2762 0.27 +0.4
463,307 + GFF2762 0.41 +0.4
463,307 + GFF2762 0.41 +0.8
463,307 + GFF2762 0.41 -0.2
463,308 - GFF2762 0.42 +0.4
463,308 - GFF2762 0.42 -0.8
463,308 - GFF2762 0.42 +0.3
463,344 - GFF2762 0.45 -0.4
463,488 - GFF2762 0.60 -0.9
463,560 + GFF2762 0.68 +1.6
463,560 + GFF2762 0.68 +0.4
463,561 - GFF2762 0.68 -0.4
463,676 + GFF2762 0.80 +0.2
463,676 + GFF2762 0.80 +0.1
463,710 - GFF2762 0.83 +1.1
463,757 + GFF2762 0.88 -1.3
463,757 + GFF2762 0.88 -0.3
463,757 + GFF2762 0.88 -0.1
463,757 + GFF2762 0.88 +0.9
463,757 + GFF2762 0.88 +1.0
463,758 - GFF2762 0.88 -0.2
463,758 - GFF2762 0.88 -0.6
463,758 - GFF2762 0.88 -2.0
463,758 - GFF2762 0.88 -1.2
463,758 - GFF2762 0.88 +0.0
463,758 - GFF2762 0.88 -1.4
463,849 + -0.8
463,850 - +0.5
464,096 + GFF2763 0.16 -0.9
464,096 + GFF2763 0.16 -0.2
464,096 + GFF2763 0.16 -0.5
464,097 - GFF2763 0.16 -1.1
464,097 - GFF2763 0.16 +1.1
464,097 - GFF2763 0.16 +1.1
464,097 - GFF2763 0.16 +0.0
464,097 - GFF2763 0.16 -2.1
464,135 + GFF2763 0.20 -1.3
464,135 + GFF2763 0.20 +0.0
464,136 - GFF2763 0.21 +0.7
464,136 - GFF2763 0.21 +0.2
464,136 - GFF2763 0.21 +0.1
464,208 + GFF2763 0.29 -0.2
464,209 - GFF2763 0.29 -0.5
464,450 + GFF2763 0.57 +0.9
464,685 + GFF2763 0.84 -1.1
464,685 + GFF2763 0.84 -0.5
464,685 + GFF2763 0.84 -0.9
464,708 + GFF2763 0.86 +1.3
464,708 + GFF2763 0.86 -0.4
464,708 + GFF2763 0.86 +0.0
464,708 + GFF2763 0.86 -0.5
464,709 - GFF2763 0.86 -0.0
464,709 - GFF2763 0.86 -0.4
464,709 - GFF2763 0.86 -0.2
464,709 - GFF2763 0.86 +0.9
464,709 - GFF2763 0.86 +0.9
464,709 - GFF2763 0.86 -1.0
464,709 - GFF2763 0.86 +1.0
464,865 + +0.7
464,865 + -0.2
464,944 + +0.7
464,945 - -0.7
465,147 - GFF2764 0.17 -0.3
465,430 + GFF2764 0.55 +1.5
465,449 + GFF2764 0.57 +0.4
465,449 + GFF2764 0.57 -0.2
465,542 + GFF2764 0.69 -1.0
465,542 + GFF2764 0.69 +0.9
465,543 - GFF2764 0.70 -1.1
465,543 - GFF2764 0.70 -2.9
465,546 - GFF2764 0.70 +0.5

Or see this region's nucleotide sequence