Strain Fitness in Xanthobacter sp. DMC5 around GFF2760

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2758 and GFF2759 are separated by 48 nucleotidesGFF2759 and GFF2760 are separated by 1 nucleotidesGFF2760 and GFF2761 overlap by 13 nucleotidesGFF2761 and GFF2762 are separated by 6 nucleotides GFF2758 - 2,3-dimethylmalate lyase, at 459,601 to 460,476 GFF2758 GFF2759 - Putative aliphatic sulfonates transport permease protein SsuC, at 460,525 to 461,313 GFF2759 GFF2760 - Nitrate import ATP-binding protein NrtD, at 461,315 to 462,148 GFF2760 GFF2761 - Putative aliphatic sulfonates transport permease protein SsuC, at 462,136 to 462,900 GFF2761 GFF2762 - hypothetical protein, at 462,907 to 463,872 GFF2762 Position (kb) 461 462 463Strain fitness (log2 ratio) -1 0 1at 460.343 kb on + strand, within GFF2758at 460.344 kb on - strand, within GFF2758at 460.355 kb on + strand, within GFF2758at 460.355 kb on + strand, within GFF2758at 460.355 kb on + strand, within GFF2758at 460.355 kb on + strand, within GFF2758at 460.356 kb on - strand, within GFF2758at 460.356 kb on - strand, within GFF2758at 460.356 kb on - strand, within GFF2758at 460.631 kb on + strand, within GFF2759at 460.632 kb on - strand, within GFF2759at 460.661 kb on + strand, within GFF2759at 460.661 kb on + strand, within GFF2759at 460.662 kb on - strand, within GFF2759at 460.662 kb on - strand, within GFF2759at 460.904 kb on + strand, within GFF2759at 460.904 kb on + strand, within GFF2759at 460.904 kb on + strand, within GFF2759at 460.904 kb on + strand, within GFF2759at 460.905 kb on - strand, within GFF2759at 460.905 kb on - strand, within GFF2759at 460.905 kb on - strand, within GFF2759at 460.905 kb on - strand, within GFF2759at 460.905 kb on - strand, within GFF2759at 460.905 kb on - strand, within GFF2759at 460.967 kb on + strand, within GFF2759at 460.967 kb on + strand, within GFF2759at 460.967 kb on + strand, within GFF2759at 460.991 kb on + strand, within GFF2759at 460.991 kb on + strand, within GFF2759at 460.991 kb on + strand, within GFF2759at 460.992 kb on - strand, within GFF2759at 461.385 kb on + strandat 461.385 kb on + strandat 461.385 kb on + strandat 461.386 kb on - strandat 461.472 kb on + strand, within GFF2760at 461.472 kb on + strand, within GFF2760at 461.473 kb on - strand, within GFF2760at 461.473 kb on - strand, within GFF2760at 461.473 kb on - strand, within GFF2760at 461.473 kb on - strand, within GFF2760at 461.473 kb on - strand, within GFF2760at 462.030 kb on + strand, within GFF2760at 462.167 kb on + strandat 462.167 kb on + strandat 462.227 kb on + strand, within GFF2761at 462.227 kb on + strand, within GFF2761at 462.227 kb on + strand, within GFF2761at 462.228 kb on - strand, within GFF2761at 462.228 kb on - strand, within GFF2761at 462.228 kb on - strand, within GFF2761at 462.383 kb on + strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.384 kb on - strand, within GFF2761at 462.395 kb on + strand, within GFF2761at 462.396 kb on - strand, within GFF2761at 462.396 kb on - strand, within GFF2761at 462.396 kb on - strand, within GFF2761at 462.419 kb on + strand, within GFF2761at 462.420 kb on - strand, within GFF2761at 462.420 kb on - strand, within GFF2761at 462.568 kb on + strand, within GFF2761at 462.568 kb on + strand, within GFF2761at 462.596 kb on + strand, within GFF2761at 462.596 kb on + strand, within GFF2761at 462.597 kb on - strand, within GFF2761at 462.624 kb on + strand, within GFF2761at 462.626 kb on + strand, within GFF2761at 462.626 kb on + strand, within GFF2761at 462.626 kb on + strand, within GFF2761at 462.627 kb on - strand, within GFF2761at 462.627 kb on - strand, within GFF2761at 462.720 kb on - strand, within GFF2761at 462.947 kb on + strandat 462.948 kb on - strandat 462.948 kb on - strandat 462.948 kb on - strandat 463.059 kb on + strand, within GFF2762at 463.060 kb on - strand, within GFF2762at 463.060 kb on - strand, within GFF2762at 463.148 kb on + strand, within GFF2762

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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460,343 + GFF2758 0.85 +0.3
460,344 - GFF2758 0.85 -1.0
460,355 + GFF2758 0.86 -1.4
460,355 + GFF2758 0.86 +0.4
460,355 + GFF2758 0.86 -0.3
460,355 + GFF2758 0.86 -1.6
460,356 - GFF2758 0.86 -1.4
460,356 - GFF2758 0.86 -0.3
460,356 - GFF2758 0.86 -1.2
460,631 + GFF2759 0.13 -0.7
460,632 - GFF2759 0.14 +0.4
460,661 + GFF2759 0.17 -0.3
460,661 + GFF2759 0.17 +0.2
460,662 - GFF2759 0.17 +0.5
460,662 - GFF2759 0.17 -1.1
460,904 + GFF2759 0.48 +1.7
460,904 + GFF2759 0.48 -0.1
460,904 + GFF2759 0.48 +0.7
460,904 + GFF2759 0.48 -1.7
460,905 - GFF2759 0.48 +0.6
460,905 - GFF2759 0.48 -0.6
460,905 - GFF2759 0.48 -1.0
460,905 - GFF2759 0.48 -0.5
460,905 - GFF2759 0.48 -1.5
460,905 - GFF2759 0.48 +0.8
460,967 + GFF2759 0.56 +0.2
460,967 + GFF2759 0.56 +1.0
460,967 + GFF2759 0.56 +0.1
460,991 + GFF2759 0.59 -0.2
460,991 + GFF2759 0.59 +0.4
460,991 + GFF2759 0.59 -0.5
460,992 - GFF2759 0.59 +0.6
461,385 + +0.6
461,385 + -0.1
461,385 + +0.8
461,386 - -1.0
461,472 + GFF2760 0.19 +0.5
461,472 + GFF2760 0.19 -0.3
461,473 - GFF2760 0.19 -0.1
461,473 - GFF2760 0.19 -0.1
461,473 - GFF2760 0.19 -0.3
461,473 - GFF2760 0.19 +0.2
461,473 - GFF2760 0.19 +1.2
462,030 + GFF2760 0.86 +0.4
462,167 + -0.9
462,167 + -0.5
462,227 + GFF2761 0.12 -0.1
462,227 + GFF2761 0.12 +0.0
462,227 + GFF2761 0.12 +0.7
462,228 - GFF2761 0.12 +0.3
462,228 - GFF2761 0.12 +1.0
462,228 - GFF2761 0.12 +0.9
462,383 + GFF2761 0.32 -0.2
462,384 - GFF2761 0.32 -0.3
462,384 - GFF2761 0.32 +0.5
462,384 - GFF2761 0.32 -0.1
462,384 - GFF2761 0.32 -1.0
462,384 - GFF2761 0.32 -0.7
462,395 + GFF2761 0.34 +0.4
462,396 - GFF2761 0.34 -0.4
462,396 - GFF2761 0.34 -1.3
462,396 - GFF2761 0.34 +0.2
462,419 + GFF2761 0.37 +0.8
462,420 - GFF2761 0.37 -0.0
462,420 - GFF2761 0.37 -1.7
462,568 + GFF2761 0.56 +1.7
462,568 + GFF2761 0.56 -0.7
462,596 + GFF2761 0.60 -0.1
462,596 + GFF2761 0.60 -0.5
462,597 - GFF2761 0.60 +0.5
462,624 + GFF2761 0.64 -0.8
462,626 + GFF2761 0.64 +0.1
462,626 + GFF2761 0.64 -0.9
462,626 + GFF2761 0.64 +0.7
462,627 - GFF2761 0.64 +0.8
462,627 - GFF2761 0.64 -0.5
462,720 - GFF2761 0.76 -1.1
462,947 + +0.7
462,948 - +0.2
462,948 - -0.1
462,948 - -0.6
463,059 + GFF2762 0.16 -0.1
463,060 - GFF2762 0.16 +0.8
463,060 - GFF2762 0.16 -1.2
463,148 + GFF2762 0.25 -0.3

Or see this region's nucleotide sequence