Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2756 and GFF2757 are separated by 10 nucleotides GFF2757 and GFF2758 overlap by 4 nucleotides GFF2758 and GFF2759 are separated by 48 nucleotides GFF2759 and GFF2760 are separated by 1 nucleotides
GFF2756 - HTH-type transcriptional regulator DmlR, at 457,759 to 458,634
GFF2756
GFF2757 - hypothetical protein, at 458,645 to 459,604
GFF2757
GFF2758 - 2,3-dimethylmalate lyase, at 459,601 to 460,476
GFF2758
GFF2759 - Putative aliphatic sulfonates transport permease protein SsuC, at 460,525 to 461,313
GFF2759
GFF2760 - Nitrate import ATP-binding protein NrtD, at 461,315 to 462,148
GFF2760
Position (kb) 459
460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 458.811 kb on + strand, within GFF2757 at 459.018 kb on + strand, within GFF2757 at 459.018 kb on + strand, within GFF2757 at 459.018 kb on + strand, within GFF2757 at 459.018 kb on + strand, within GFF2757 at 459.018 kb on + strand, within GFF2757 at 459.087 kb on + strand, within GFF2757 at 459.387 kb on + strand, within GFF2757 at 459.387 kb on + strand, within GFF2757 at 459.388 kb on - strand, within GFF2757 at 459.388 kb on - strand, within GFF2757 at 459.388 kb on - strand, within GFF2757 at 459.388 kb on - strand, within GFF2757 at 459.388 kb on - strand, within GFF2757 at 459.589 kb on - strand at 460.177 kb on - strand, within GFF2758 at 460.214 kb on + strand, within GFF2758 at 460.214 kb on + strand, within GFF2758 at 460.292 kb on + strand, within GFF2758 at 460.292 kb on + strand, within GFF2758 at 460.292 kb on + strand, within GFF2758 at 460.292 kb on + strand, within GFF2758 at 460.343 kb on + strand, within GFF2758 at 460.344 kb on - strand, within GFF2758 at 460.355 kb on + strand, within GFF2758 at 460.355 kb on + strand, within GFF2758 at 460.355 kb on + strand, within GFF2758 at 460.355 kb on + strand, within GFF2758 at 460.356 kb on - strand, within GFF2758 at 460.356 kb on - strand, within GFF2758 at 460.356 kb on - strand, within GFF2758 at 460.631 kb on + strand, within GFF2759 at 460.632 kb on - strand, within GFF2759 at 460.661 kb on + strand, within GFF2759 at 460.661 kb on + strand, within GFF2759 at 460.662 kb on - strand, within GFF2759 at 460.662 kb on - strand, within GFF2759 at 460.904 kb on + strand, within GFF2759 at 460.904 kb on + strand, within GFF2759 at 460.904 kb on + strand, within GFF2759 at 460.904 kb on + strand, within GFF2759 at 460.905 kb on - strand, within GFF2759 at 460.905 kb on - strand, within GFF2759 at 460.905 kb on - strand, within GFF2759 at 460.905 kb on - strand, within GFF2759 at 460.905 kb on - strand, within GFF2759 at 460.905 kb on - strand, within GFF2759 at 460.967 kb on + strand, within GFF2759 at 460.967 kb on + strand, within GFF2759 at 460.967 kb on + strand, within GFF2759 at 460.991 kb on + strand, within GFF2759 at 460.991 kb on + strand, within GFF2759 at 460.991 kb on + strand, within GFF2759 at 460.992 kb on - strand, within GFF2759 at 461.385 kb on + strand at 461.385 kb on + strand at 461.385 kb on + strand at 461.386 kb on - strand at 461.472 kb on + strand, within GFF2760 at 461.472 kb on + strand, within GFF2760 at 461.473 kb on - strand, within GFF2760 at 461.473 kb on - strand, within GFF2760 at 461.473 kb on - strand, within GFF2760 at 461.473 kb on - strand, within GFF2760 at 461.473 kb on - strand, within GFF2760
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 458,811 + GFF2757 0.17 -0.1 459,018 + GFF2757 0.39 +0.3 459,018 + GFF2757 0.39 -0.2 459,018 + GFF2757 0.39 +0.1 459,018 + GFF2757 0.39 +0.0 459,018 + GFF2757 0.39 +0.9 459,087 + GFF2757 0.46 -0.2 459,387 + GFF2757 0.77 -0.3 459,387 + GFF2757 0.77 -0.4 459,388 - GFF2757 0.77 +1.3 459,388 - GFF2757 0.77 -0.2 459,388 - GFF2757 0.77 +0.8 459,388 - GFF2757 0.77 -0.1 459,388 - GFF2757 0.77 +0.6 459,589 - -2.9 460,177 - GFF2758 0.66 +0.1 460,214 + GFF2758 0.70 -1.0 460,214 + GFF2758 0.70 -0.8 460,292 + GFF2758 0.79 +0.7 460,292 + GFF2758 0.79 -0.1 460,292 + GFF2758 0.79 -0.3 460,292 + GFF2758 0.79 -0.3 460,343 + GFF2758 0.85 +0.3 460,344 - GFF2758 0.85 -1.0 460,355 + GFF2758 0.86 -1.4 460,355 + GFF2758 0.86 +0.4 460,355 + GFF2758 0.86 -0.3 460,355 + GFF2758 0.86 -1.6 460,356 - GFF2758 0.86 -1.4 460,356 - GFF2758 0.86 -0.3 460,356 - GFF2758 0.86 -1.2 460,631 + GFF2759 0.13 -0.7 460,632 - GFF2759 0.14 +0.4 460,661 + GFF2759 0.17 -0.3 460,661 + GFF2759 0.17 +0.2 460,662 - GFF2759 0.17 +0.5 460,662 - GFF2759 0.17 -1.1 460,904 + GFF2759 0.48 +1.7 460,904 + GFF2759 0.48 -0.1 460,904 + GFF2759 0.48 +0.7 460,904 + GFF2759 0.48 -1.7 460,905 - GFF2759 0.48 +0.6 460,905 - GFF2759 0.48 -0.6 460,905 - GFF2759 0.48 -1.0 460,905 - GFF2759 0.48 -0.5 460,905 - GFF2759 0.48 -1.5 460,905 - GFF2759 0.48 +0.8 460,967 + GFF2759 0.56 +0.2 460,967 + GFF2759 0.56 +1.0 460,967 + GFF2759 0.56 +0.1 460,991 + GFF2759 0.59 -0.2 460,991 + GFF2759 0.59 +0.4 460,991 + GFF2759 0.59 -0.5 460,992 - GFF2759 0.59 +0.6 461,385 + +0.6 461,385 + -0.1 461,385 + +0.8 461,386 - -1.0 461,472 + GFF2760 0.19 +0.5 461,472 + GFF2760 0.19 -0.3 461,473 - GFF2760 0.19 -0.1 461,473 - GFF2760 0.19 -0.1 461,473 - GFF2760 0.19 -0.3 461,473 - GFF2760 0.19 +0.2 461,473 - GFF2760 0.19 +1.2
Or see this region's nucleotide sequence