Strain Fitness in Xanthobacter sp. DMC5 around GFF2746

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2745 and GFF2746 are separated by 317 nucleotidesGFF2746 and GFF2747 are separated by 4 nucleotides GFF2745 - Iron(3+)-hydroxamate import ATP-binding protein FhuC, at 444,679 to 445,431 GFF2745 GFF2746 - hypothetical protein, at 445,749 to 446,420 GFF2746 GFF2747 - Para-nitrobenzyl esterase, at 446,425 to 447,954 GFF2747 Position (kb) 445 446 447Strain fitness (log2 ratio) -2 -1 0 1 2 3at 444.901 kb on + strand, within GFF2745at 444.944 kb on - strand, within GFF2745at 445.273 kb on - strand, within GFF2745at 445.335 kb on + strand, within GFF2745at 445.335 kb on + strand, within GFF2745at 445.335 kb on + strand, within GFF2745at 445.336 kb on - strand, within GFF2745at 445.362 kb on - strandat 445.537 kb on + strandat 445.537 kb on + strandat 445.537 kb on + strandat 445.537 kb on + strandat 445.538 kb on - strandat 445.538 kb on - strandat 445.538 kb on - strandat 445.538 kb on - strandat 445.538 kb on - strandat 445.538 kb on - strandat 445.612 kb on - strandat 445.662 kb on - strandat 445.718 kb on - strandat 445.718 kb on - strandat 445.735 kb on + strandat 445.735 kb on + strandat 445.735 kb on + strandat 445.736 kb on - strandat 445.736 kb on - strandat 445.736 kb on - strandat 445.842 kb on + strand, within GFF2746at 445.858 kb on + strand, within GFF2746at 445.858 kb on + strand, within GFF2746at 445.858 kb on + strand, within GFF2746at 445.859 kb on - strand, within GFF2746at 445.859 kb on - strand, within GFF2746at 445.902 kb on + strand, within GFF2746at 445.903 kb on - strand, within GFF2746at 445.903 kb on - strand, within GFF2746at 445.953 kb on + strand, within GFF2746at 445.953 kb on + strand, within GFF2746at 445.953 kb on + strand, within GFF2746at 445.953 kb on + strand, within GFF2746at 445.953 kb on + strand, within GFF2746at 446.050 kb on + strand, within GFF2746at 446.051 kb on - strand, within GFF2746at 446.051 kb on - strand, within GFF2746at 446.071 kb on + strand, within GFF2746at 446.071 kb on + strand, within GFF2746at 446.071 kb on + strand, within GFF2746at 446.167 kb on - strand, within GFF2746at 446.167 kb on - strand, within GFF2746at 446.318 kb on - strand, within GFF2746at 446.508 kb on + strandat 446.509 kb on - strandat 446.516 kb on + strandat 446.516 kb on + strandat 446.516 kb on + strandat 446.520 kb on + strandat 446.521 kb on - strandat 446.521 kb on - strandat 446.521 kb on - strandat 446.521 kb on - strandat 446.528 kb on - strandat 446.604 kb on + strand, within GFF2747at 446.604 kb on + strand, within GFF2747at 446.605 kb on - strand, within GFF2747at 446.605 kb on - strand, within GFF2747at 446.651 kb on + strand, within GFF2747at 446.651 kb on + strand, within GFF2747at 446.651 kb on + strand, within GFF2747at 446.651 kb on + strand, within GFF2747at 446.651 kb on + strand, within GFF2747at 446.652 kb on - strand, within GFF2747at 446.652 kb on - strand, within GFF2747at 446.652 kb on - strand, within GFF2747at 446.652 kb on - strand, within GFF2747at 446.652 kb on - strand, within GFF2747at 446.652 kb on - strand, within GFF2747at 446.758 kb on + strand, within GFF2747at 446.758 kb on + strand, within GFF2747at 446.759 kb on - strand, within GFF2747at 446.801 kb on - strand, within GFF2747at 446.854 kb on + strand, within GFF2747at 446.855 kb on - strand, within GFF2747at 446.984 kb on + strand, within GFF2747at 447.121 kb on + strand, within GFF2747at 447.121 kb on + strand, within GFF2747at 447.122 kb on - strand, within GFF2747at 447.122 kb on - strand, within GFF2747at 447.122 kb on - strand, within GFF2747at 447.122 kb on - strand, within GFF2747at 447.165 kb on + strand, within GFF2747at 447.166 kb on - strand, within GFF2747at 447.166 kb on - strand, within GFF2747at 447.262 kb on + strand, within GFF2747at 447.263 kb on - strand, within GFF2747at 447.283 kb on + strand, within GFF2747at 447.283 kb on + strand, within GFF2747at 447.284 kb on - strand, within GFF2747

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
444,901 + GFF2745 0.29 -0.9
444,944 - GFF2745 0.35 +0.5
445,273 - GFF2745 0.79 -0.2
445,335 + GFF2745 0.87 -0.0
445,335 + GFF2745 0.87 +1.4
445,335 + GFF2745 0.87 -0.3
445,336 - GFF2745 0.87 +1.3
445,362 - +0.2
445,537 + -1.3
445,537 + -1.0
445,537 + -1.8
445,537 + -0.0
445,538 - +0.2
445,538 - -0.5
445,538 - +0.2
445,538 - -0.6
445,538 - +0.5
445,538 - -0.8
445,612 - -0.5
445,662 - -1.7
445,718 - +0.5
445,718 - +0.1
445,735 + -0.0
445,735 + +0.2
445,735 + -0.6
445,736 - +0.0
445,736 - +0.0
445,736 - -0.5
445,842 + GFF2746 0.14 +0.3
445,858 + GFF2746 0.16 +0.0
445,858 + GFF2746 0.16 -0.2
445,858 + GFF2746 0.16 -1.0
445,859 - GFF2746 0.16 +0.0
445,859 - GFF2746 0.16 +0.7
445,902 + GFF2746 0.23 -0.5
445,903 - GFF2746 0.23 -0.3
445,903 - GFF2746 0.23 -0.2
445,953 + GFF2746 0.30 +0.0
445,953 + GFF2746 0.30 +0.2
445,953 + GFF2746 0.30 +1.1
445,953 + GFF2746 0.30 -1.6
445,953 + GFF2746 0.30 +0.1
446,050 + GFF2746 0.45 -0.3
446,051 - GFF2746 0.45 -0.4
446,051 - GFF2746 0.45 +2.0
446,071 + GFF2746 0.48 +0.3
446,071 + GFF2746 0.48 +0.7
446,071 + GFF2746 0.48 +0.2
446,167 - GFF2746 0.62 -0.3
446,167 - GFF2746 0.62 -0.3
446,318 - GFF2746 0.85 -0.7
446,508 + -2.1
446,509 - +0.9
446,516 + -0.9
446,516 + -1.1
446,516 + +0.2
446,520 + -0.4
446,521 - +0.2
446,521 - -0.8
446,521 - -0.9
446,521 - +1.1
446,528 - -0.7
446,604 + GFF2747 0.12 -0.7
446,604 + GFF2747 0.12 -2.1
446,605 - GFF2747 0.12 +0.3
446,605 - GFF2747 0.12 +2.9
446,651 + GFF2747 0.15 -0.5
446,651 + GFF2747 0.15 -0.2
446,651 + GFF2747 0.15 -1.1
446,651 + GFF2747 0.15 +0.6
446,651 + GFF2747 0.15 -1.0
446,652 - GFF2747 0.15 +1.5
446,652 - GFF2747 0.15 -0.3
446,652 - GFF2747 0.15 -0.2
446,652 - GFF2747 0.15 +1.2
446,652 - GFF2747 0.15 +0.1
446,652 - GFF2747 0.15 +0.0
446,758 + GFF2747 0.22 -1.0
446,758 + GFF2747 0.22 +2.0
446,759 - GFF2747 0.22 +0.9
446,801 - GFF2747 0.25 -0.3
446,854 + GFF2747 0.28 +0.5
446,855 - GFF2747 0.28 +0.5
446,984 + GFF2747 0.37 +0.5
447,121 + GFF2747 0.45 -0.4
447,121 + GFF2747 0.45 +0.3
447,122 - GFF2747 0.46 -0.7
447,122 - GFF2747 0.46 +0.8
447,122 - GFF2747 0.46 -1.0
447,122 - GFF2747 0.46 -0.7
447,165 + GFF2747 0.48 -0.4
447,166 - GFF2747 0.48 -0.7
447,166 - GFF2747 0.48 +0.6
447,262 + GFF2747 0.55 +0.2
447,263 - GFF2747 0.55 -0.3
447,283 + GFF2747 0.56 -2.0
447,283 + GFF2747 0.56 -0.3
447,284 - GFF2747 0.56 +0.6

Or see this region's nucleotide sequence