Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2734 and GFF2735 are separated by 19 nucleotides GFF2735 and GFF2736 are separated by 120 nucleotides
GFF2734 - Glutathionyl-hydroquinone reductase PcpF, at 428,847 to 429,797
GFF2734
GFF2735 - hypothetical protein, at 429,817 to 430,452
GFF2735
GFF2736 - Antibiotic efflux pump outer membrane protein ArpC, at 430,573 to 432,108
GFF2736
Position (kb) 429
430
431 Strain fitness (log2 ratio) -2
-1
0
1
2 at 428.819 kb on + strand at 428.819 kb on + strand at 428.820 kb on - strand at 428.820 kb on - strand at 428.820 kb on - strand at 428.820 kb on - strand at 428.820 kb on - strand at 428.823 kb on + strand at 428.823 kb on + strand at 428.824 kb on - strand at 428.824 kb on - strand at 428.839 kb on + strand at 428.840 kb on - strand at 428.840 kb on - strand at 428.840 kb on - strand at 428.860 kb on + strand at 428.861 kb on - strand at 428.861 kb on - strand at 428.861 kb on - strand at 428.899 kb on + strand at 428.900 kb on - strand at 428.939 kb on + strand at 428.995 kb on - strand, within GFF2734 at 429.003 kb on + strand, within GFF2734 at 429.003 kb on + strand, within GFF2734 at 429.003 kb on + strand, within GFF2734 at 429.003 kb on + strand, within GFF2734 at 429.003 kb on + strand, within GFF2734 at 429.004 kb on - strand, within GFF2734 at 429.004 kb on - strand, within GFF2734 at 429.158 kb on - strand, within GFF2734 at 429.158 kb on - strand, within GFF2734 at 429.158 kb on - strand, within GFF2734 at 429.186 kb on + strand, within GFF2734 at 429.186 kb on + strand, within GFF2734 at 429.186 kb on + strand, within GFF2734 at 429.187 kb on - strand, within GFF2734 at 429.188 kb on + strand, within GFF2734 at 429.188 kb on + strand, within GFF2734 at 429.189 kb on - strand, within GFF2734 at 429.300 kb on - strand, within GFF2734 at 429.337 kb on - strand, within GFF2734 at 429.340 kb on - strand, within GFF2734 at 429.387 kb on + strand, within GFF2734 at 429.388 kb on - strand, within GFF2734 at 429.388 kb on - strand, within GFF2734 at 429.388 kb on - strand, within GFF2734 at 429.411 kb on + strand, within GFF2734 at 429.411 kb on + strand, within GFF2734 at 429.444 kb on + strand, within GFF2734 at 429.585 kb on + strand, within GFF2734 at 429.585 kb on + strand, within GFF2734 at 429.628 kb on - strand, within GFF2734 at 429.645 kb on + strand, within GFF2734 at 429.646 kb on - strand, within GFF2734 at 429.646 kb on - strand, within GFF2734 at 429.661 kb on - strand, within GFF2734 at 429.661 kb on - strand, within GFF2734 at 429.661 kb on - strand, within GFF2734 at 429.661 kb on - strand, within GFF2734 at 429.714 kb on + strand at 429.714 kb on + strand at 429.714 kb on + strand at 429.715 kb on - strand at 429.715 kb on - strand at 429.715 kb on - strand at 429.717 kb on + strand at 429.717 kb on + strand at 429.717 kb on + strand at 429.718 kb on - strand at 429.827 kb on + strand at 429.828 kb on - strand at 429.828 kb on - strand at 430.010 kb on + strand, within GFF2735 at 430.010 kb on + strand, within GFF2735 at 430.010 kb on + strand, within GFF2735 at 430.010 kb on + strand, within GFF2735 at 430.011 kb on - strand, within GFF2735 at 430.011 kb on - strand, within GFF2735 at 430.011 kb on - strand, within GFF2735 at 430.052 kb on + strand, within GFF2735 at 430.052 kb on + strand, within GFF2735 at 430.145 kb on + strand, within GFF2735 at 430.146 kb on - strand, within GFF2735 at 430.205 kb on + strand, within GFF2735 at 430.206 kb on - strand, within GFF2735 at 430.206 kb on - strand, within GFF2735 at 430.283 kb on + strand, within GFF2735 at 430.283 kb on + strand, within GFF2735 at 430.283 kb on + strand, within GFF2735 at 430.344 kb on - strand, within GFF2735 at 430.464 kb on - strand at 430.503 kb on + strand at 430.503 kb on + strand at 430.513 kb on + strand at 430.554 kb on + strand at 430.569 kb on - strand at 430.569 kb on - strand at 430.569 kb on - strand at 430.572 kb on + strand at 430.572 kb on + strand at 430.573 kb on - strand at 430.573 kb on - strand at 430.573 kb on - strand at 431.023 kb on + strand, within GFF2736 at 431.023 kb on + strand, within GFF2736 at 431.024 kb on - strand, within GFF2736 at 431.032 kb on + strand, within GFF2736 at 431.033 kb on - strand, within GFF2736 at 431.056 kb on + strand, within GFF2736 at 431.056 kb on + strand, within GFF2736 at 431.056 kb on + strand, within GFF2736 at 431.057 kb on - strand, within GFF2736 at 431.057 kb on - strand, within GFF2736 at 431.057 kb on - strand, within GFF2736 at 431.057 kb on - strand, within GFF2736 at 431.057 kb on - strand, within GFF2736 at 431.057 kb on - strand, within GFF2736 at 431.057 kb on - strand, within GFF2736 at 431.119 kb on + strand, within GFF2736 at 431.119 kb on + strand, within GFF2736 at 431.146 kb on + strand, within GFF2736 at 431.146 kb on + strand, within GFF2736 at 431.147 kb on - strand, within GFF2736 at 431.147 kb on - strand, within GFF2736 at 431.147 kb on - strand, within GFF2736 at 431.395 kb on + strand, within GFF2736 at 431.395 kb on + strand, within GFF2736 at 431.395 kb on + strand, within GFF2736 at 431.396 kb on - strand, within GFF2736 at 431.396 kb on - strand, within GFF2736 at 431.396 kb on - strand, within GFF2736 at 431.396 kb on - strand, within GFF2736
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 428,819 + +0.5 428,819 + -0.6 428,820 - -0.1 428,820 - +0.6 428,820 - +0.3 428,820 - -0.9 428,820 - +0.5 428,823 + +0.5 428,823 + +0.2 428,824 - -0.4 428,824 - -1.5 428,839 + +0.7 428,840 - -0.7 428,840 - -1.4 428,840 - -0.6 428,860 + +0.7 428,861 - +0.2 428,861 - -1.1 428,861 - -0.9 428,899 + +2.1 428,900 - +1.8 428,939 + +0.6 428,995 - GFF2734 0.16 +0.2 429,003 + GFF2734 0.16 -1.7 429,003 + GFF2734 0.16 -0.3 429,003 + GFF2734 0.16 -1.5 429,003 + GFF2734 0.16 +0.5 429,003 + GFF2734 0.16 +0.5 429,004 - GFF2734 0.17 +0.2 429,004 - GFF2734 0.17 -1.5 429,158 - GFF2734 0.33 -1.2 429,158 - GFF2734 0.33 -0.2 429,158 - GFF2734 0.33 -0.1 429,186 + GFF2734 0.36 -1.9 429,186 + GFF2734 0.36 +1.5 429,186 + GFF2734 0.36 -0.9 429,187 - GFF2734 0.36 -1.3 429,188 + GFF2734 0.36 -0.5 429,188 + GFF2734 0.36 +0.4 429,189 - GFF2734 0.36 -0.1 429,300 - GFF2734 0.48 -0.3 429,337 - GFF2734 0.52 +0.3 429,340 - GFF2734 0.52 +0.7 429,387 + GFF2734 0.57 +1.9 429,388 - GFF2734 0.57 +0.1 429,388 - GFF2734 0.57 +1.2 429,388 - GFF2734 0.57 -0.3 429,411 + GFF2734 0.59 +1.8 429,411 + GFF2734 0.59 +0.8 429,444 + GFF2734 0.63 +0.0 429,585 + GFF2734 0.78 +0.9 429,585 + GFF2734 0.78 +0.8 429,628 - GFF2734 0.82 +0.2 429,645 + GFF2734 0.84 +0.2 429,646 - GFF2734 0.84 +0.8 429,646 - GFF2734 0.84 +0.7 429,661 - GFF2734 0.86 -0.9 429,661 - GFF2734 0.86 +0.0 429,661 - GFF2734 0.86 -0.8 429,661 - GFF2734 0.86 -1.4 429,714 + +0.2 429,714 + +0.4 429,714 + -0.9 429,715 - +0.2 429,715 - -1.6 429,715 - -0.2 429,717 + -0.1 429,717 + +0.1 429,717 + +0.1 429,718 - -0.5 429,827 + -0.8 429,828 - +0.4 429,828 - -1.5 430,010 + GFF2735 0.30 -0.1 430,010 + GFF2735 0.30 -0.5 430,010 + GFF2735 0.30 +0.4 430,010 + GFF2735 0.30 -1.1 430,011 - GFF2735 0.31 -1.1 430,011 - GFF2735 0.31 -0.0 430,011 - GFF2735 0.31 +0.0 430,052 + GFF2735 0.37 +1.4 430,052 + GFF2735 0.37 -0.5 430,145 + GFF2735 0.52 -0.9 430,146 - GFF2735 0.52 -1.5 430,205 + GFF2735 0.61 +0.2 430,206 - GFF2735 0.61 +0.2 430,206 - GFF2735 0.61 -0.7 430,283 + GFF2735 0.73 -0.5 430,283 + GFF2735 0.73 +0.7 430,283 + GFF2735 0.73 -0.8 430,344 - GFF2735 0.83 -0.4 430,464 - +0.2 430,503 + +1.3 430,503 + +0.3 430,513 + +0.6 430,554 + -1.1 430,569 - -0.0 430,569 - +0.4 430,569 - +0.3 430,572 + +0.6 430,572 + -0.3 430,573 - -0.4 430,573 - -1.0 430,573 - +0.2 431,023 + GFF2736 0.29 -1.1 431,023 + GFF2736 0.29 +2.0 431,024 - GFF2736 0.29 -0.1 431,032 + GFF2736 0.30 +0.3 431,033 - GFF2736 0.30 -0.2 431,056 + GFF2736 0.31 -0.5 431,056 + GFF2736 0.31 +0.1 431,056 + GFF2736 0.31 +0.5 431,057 - GFF2736 0.32 +0.4 431,057 - GFF2736 0.32 +0.2 431,057 - GFF2736 0.32 -0.2 431,057 - GFF2736 0.32 -0.1 431,057 - GFF2736 0.32 +1.3 431,057 - GFF2736 0.32 +1.3 431,057 - GFF2736 0.32 +0.3 431,119 + GFF2736 0.36 -0.3 431,119 + GFF2736 0.36 -0.4 431,146 + GFF2736 0.37 -0.8 431,146 + GFF2736 0.37 +0.1 431,147 - GFF2736 0.37 -0.9 431,147 - GFF2736 0.37 +1.1 431,147 - GFF2736 0.37 -0.9 431,395 + GFF2736 0.54 +0.1 431,395 + GFF2736 0.54 -0.2 431,395 + GFF2736 0.54 -0.7 431,396 - GFF2736 0.54 +0.5 431,396 - GFF2736 0.54 -0.7 431,396 - GFF2736 0.54 -0.5 431,396 - GFF2736 0.54 -0.1
Or see this region's nucleotide sequence