Strain Fitness in Xanthobacter sp. DMC5 around GFF2711

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2710 and GFF2711 are separated by 542 nucleotidesGFF2711 and GFF2712 overlap by 4 nucleotidesGFF2712 and GFF2713 overlap by 8 nucleotidesGFF2713 and GFF2714 are separated by 11 nucleotides GFF2710 - Iron(3+)-hydroxamate import ATP-binding protein FhuC, at 401,553 to 402,341 GFF2710 GFF2711 - hypothetical protein, at 402,884 to 403,624 GFF2711 GFF2712 - Biopolymer transport protein ExbD, at 403,621 to 404,052 GFF2712 GFF2713 - Tol-Pal system protein TolQ, at 404,045 to 404,530 GFF2713 GFF2714 - hypothetical protein, at 404,542 to 406,365 GFF2714 Position (kb) 402 403 404Strain fitness (log2 ratio) -2 -1 0 1 2at 401.951 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.082 kb on + strand, within GFF2710at 402.083 kb on - strand, within GFF2710at 402.083 kb on - strand, within GFF2710at 402.083 kb on - strand, within GFF2710at 402.083 kb on - strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.148 kb on + strand, within GFF2710at 402.149 kb on - strand, within GFF2710at 402.149 kb on - strand, within GFF2710at 402.149 kb on - strand, within GFF2710at 402.245 kb on + strand, within GFF2710at 402.246 kb on - strand, within GFF2710at 402.246 kb on - strand, within GFF2710at 402.276 kb on + strandat 402.276 kb on + strandat 402.277 kb on - strandat 402.277 kb on - strandat 402.283 kb on + strandat 402.283 kb on + strandat 402.284 kb on - strandat 402.367 kb on + strandat 402.367 kb on + strandat 402.367 kb on + strandat 402.367 kb on + strandat 402.367 kb on + strandat 402.367 kb on + strandat 402.368 kb on - strandat 402.368 kb on - strandat 402.368 kb on - strandat 402.368 kb on - strandat 402.368 kb on - strandat 402.380 kb on + strandat 402.381 kb on - strandat 402.381 kb on - strandat 402.381 kb on - strandat 402.438 kb on + strandat 402.439 kb on - strandat 402.450 kb on - strandat 402.502 kb on + strandat 402.502 kb on + strandat 402.503 kb on - strandat 402.572 kb on + strandat 402.572 kb on + strandat 402.573 kb on - strandat 402.573 kb on - strandat 402.622 kb on + strandat 402.622 kb on + strandat 402.833 kb on + strandat 402.857 kb on + strandat 402.898 kb on - strandat 402.922 kb on + strandat 402.922 kb on + strandat 402.922 kb on + strandat 402.922 kb on + strandat 402.923 kb on - strandat 402.984 kb on + strand, within GFF2711at 402.984 kb on + strand, within GFF2711at 402.984 kb on + strand, within GFF2711at 402.984 kb on + strand, within GFF2711at 402.985 kb on - strand, within GFF2711at 403.065 kb on + strand, within GFF2711at 403.065 kb on + strand, within GFF2711at 403.066 kb on - strand, within GFF2711at 403.066 kb on - strand, within GFF2711at 403.110 kb on + strand, within GFF2711at 403.111 kb on - strand, within GFF2711at 403.152 kb on + strand, within GFF2711at 403.152 kb on + strand, within GFF2711at 403.152 kb on + strand, within GFF2711at 403.152 kb on + strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.153 kb on - strand, within GFF2711at 403.519 kb on - strand, within GFF2711at 404.160 kb on + strand, within GFF2713at 404.161 kb on - strand, within GFF2713at 404.161 kb on - strand, within GFF2713at 404.161 kb on - strand, within GFF2713at 404.317 kb on + strand, within GFF2713at 404.317 kb on + strand, within GFF2713at 404.317 kb on + strand, within GFF2713at 404.318 kb on - strand, within GFF2713at 404.318 kb on - strand, within GFF2713at 404.319 kb on + strand, within GFF2713at 404.319 kb on + strand, within GFF2713at 404.319 kb on + strand, within GFF2713at 404.319 kb on + strand, within GFF2713at 404.319 kb on + strand, within GFF2713at 404.319 kb on + strand, within GFF2713at 404.320 kb on - strand, within GFF2713at 404.320 kb on - strand, within GFF2713at 404.320 kb on - strand, within GFF2713at 404.320 kb on - strand, within GFF2713at 404.320 kb on - strand, within GFF2713at 404.397 kb on + strand, within GFF2713at 404.397 kb on + strand, within GFF2713at 404.398 kb on - strand, within GFF2713at 404.398 kb on - strand, within GFF2713at 404.398 kb on - strand, within GFF2713at 404.493 kb on + strandat 404.493 kb on + strandat 404.494 kb on - strandat 404.494 kb on - strandat 404.494 kb on - strandat 404.494 kb on - strandat 404.494 kb on - strandat 404.497 kb on - strandat 404.589 kb on + strandat 404.589 kb on + strandat 404.591 kb on + strandat 404.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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401,951 + GFF2710 0.50 -0.1
402,082 + GFF2710 0.67 -1.2
402,082 + GFF2710 0.67 +0.7
402,082 + GFF2710 0.67 +0.0
402,082 + GFF2710 0.67 -0.5
402,082 + GFF2710 0.67 +0.9
402,082 + GFF2710 0.67 +0.3
402,082 + GFF2710 0.67 +1.0
402,082 + GFF2710 0.67 +1.6
402,083 - GFF2710 0.67 +0.5
402,083 - GFF2710 0.67 +0.5
402,083 - GFF2710 0.67 +0.0
402,083 - GFF2710 0.67 +0.4
402,148 + GFF2710 0.75 -0.6
402,148 + GFF2710 0.75 -0.8
402,148 + GFF2710 0.75 +0.8
402,148 + GFF2710 0.75 -0.5
402,148 + GFF2710 0.75 -1.8
402,148 + GFF2710 0.75 -0.6
402,148 + GFF2710 0.75 -0.2
402,148 + GFF2710 0.75 -0.9
402,148 + GFF2710 0.75 -0.1
402,149 - GFF2710 0.76 +0.6
402,149 - GFF2710 0.76 -1.1
402,149 - GFF2710 0.76 -0.2
402,245 + GFF2710 0.88 +0.5
402,246 - GFF2710 0.88 -0.5
402,246 - GFF2710 0.88 -0.3
402,276 + +0.5
402,276 + +0.8
402,277 - -0.3
402,277 - +0.3
402,283 + +0.8
402,283 + -0.3
402,284 - -0.2
402,367 + -0.8
402,367 + -0.5
402,367 + +0.2
402,367 + -0.5
402,367 + +0.9
402,367 + -0.5
402,368 - -0.9
402,368 - +0.4
402,368 - -0.2
402,368 - -2.1
402,368 - +0.9
402,380 + -0.6
402,381 - -0.3
402,381 - +1.0
402,381 - -0.7
402,438 + +0.6
402,439 - -1.4
402,450 - -1.7
402,502 + -0.2
402,502 + +0.7
402,503 - +0.3
402,572 + +0.5
402,572 + -1.9
402,573 - +0.0
402,573 - -0.8
402,622 + +0.1
402,622 + -0.3
402,833 + -0.5
402,857 + -0.4
402,898 - +1.2
402,922 + +0.9
402,922 + +0.3
402,922 + -2.1
402,922 + -0.8
402,923 - +0.2
402,984 + GFF2711 0.13 +0.2
402,984 + GFF2711 0.13 +0.4
402,984 + GFF2711 0.13 -1.8
402,984 + GFF2711 0.13 -1.0
402,985 - GFF2711 0.14 -0.4
403,065 + GFF2711 0.24 -0.4
403,065 + GFF2711 0.24 -1.1
403,066 - GFF2711 0.25 +0.3
403,066 - GFF2711 0.25 -0.5
403,110 + GFF2711 0.30 -0.8
403,111 - GFF2711 0.31 +1.5
403,152 + GFF2711 0.36 +1.5
403,152 + GFF2711 0.36 -0.3
403,152 + GFF2711 0.36 -1.8
403,152 + GFF2711 0.36 -0.9
403,153 - GFF2711 0.36 -1.1
403,153 - GFF2711 0.36 -1.0
403,153 - GFF2711 0.36 +1.0
403,153 - GFF2711 0.36 +1.2
403,153 - GFF2711 0.36 +1.1
403,519 - GFF2711 0.86 -0.5
404,160 + GFF2713 0.24 -1.0
404,161 - GFF2713 0.24 +0.8
404,161 - GFF2713 0.24 -1.1
404,161 - GFF2713 0.24 +0.2
404,317 + GFF2713 0.56 +0.7
404,317 + GFF2713 0.56 +0.5
404,317 + GFF2713 0.56 -0.6
404,318 - GFF2713 0.56 +0.9
404,318 - GFF2713 0.56 -0.0
404,319 + GFF2713 0.56 +0.4
404,319 + GFF2713 0.56 +0.1
404,319 + GFF2713 0.56 -0.6
404,319 + GFF2713 0.56 -0.9
404,319 + GFF2713 0.56 +2.0
404,319 + GFF2713 0.56 +0.1
404,320 - GFF2713 0.57 -1.3
404,320 - GFF2713 0.57 +0.1
404,320 - GFF2713 0.57 -1.5
404,320 - GFF2713 0.57 -0.1
404,320 - GFF2713 0.57 +1.1
404,397 + GFF2713 0.72 -0.7
404,397 + GFF2713 0.72 -0.2
404,398 - GFF2713 0.73 +0.0
404,398 - GFF2713 0.73 -0.9
404,398 - GFF2713 0.73 -1.3
404,493 + -0.6
404,493 + +0.7
404,494 - +0.4
404,494 - +0.2
404,494 - -1.4
404,494 - -0.5
404,494 - +1.5
404,497 - -2.2
404,589 + -0.7
404,589 + -0.6
404,591 + +0.1
404,591 + +0.4

Or see this region's nucleotide sequence