Strain Fitness in Xanthobacter sp. DMC5 around GFF2706

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2705 and GFF2706 are separated by 107 nucleotidesGFF2706 and GFF2707 are separated by 9 nucleotidesGFF2707 and GFF2708 overlap by 4 nucleotides GFF2705 - hypothetical protein, at 393,901 to 394,392 GFF2705 GFF2706 - Ferrichrome outer membrane transporter/phage receptor, at 394,500 to 396,926 GFF2706 GFF2707 - Iron(3+)-hydroxamate-binding protein FhuD, at 396,936 to 397,850 GFF2707 GFF2708 - Iron(3+)-hydroxamate import system permease protein FhuB, at 397,847 to 399,874 GFF2708 Position (kb) 394 395 396 397Strain fitness (log2 ratio) -2 -1 0 1 2at 394.037 kb on + strand, within GFF2705at 394.038 kb on - strand, within GFF2705at 394.191 kb on + strand, within GFF2705at 394.191 kb on + strand, within GFF2705at 394.192 kb on - strand, within GFF2705at 394.192 kb on - strand, within GFF2705at 394.192 kb on - strand, within GFF2705at 394.192 kb on - strand, within GFF2705at 394.192 kb on - strand, within GFF2705at 394.336 kb on + strand, within GFF2705at 394.336 kb on + strand, within GFF2705at 394.336 kb on + strand, within GFF2705at 394.337 kb on - strand, within GFF2705at 394.506 kb on + strandat 394.701 kb on + strandat 394.701 kb on + strandat 394.701 kb on + strandat 394.701 kb on + strandat 394.701 kb on + strandat 394.701 kb on + strandat 394.701 kb on + strandat 394.701 kb on + strandat 394.701 kb on + strandat 394.702 kb on - strandat 394.702 kb on - strandat 394.702 kb on - strandat 394.702 kb on - strandat 394.702 kb on - strandat 394.702 kb on - strandat 394.702 kb on - strandat 395.016 kb on + strand, within GFF2706at 395.079 kb on + strand, within GFF2706at 395.080 kb on - strand, within GFF2706at 395.082 kb on - strand, within GFF2706at 395.082 kb on - strand, within GFF2706at 395.082 kb on - strand, within GFF2706at 395.082 kb on - strand, within GFF2706at 395.106 kb on + strand, within GFF2706at 395.107 kb on - strand, within GFF2706at 395.107 kb on - strand, within GFF2706at 395.107 kb on - strand, within GFF2706at 395.123 kb on + strand, within GFF2706at 395.123 kb on + strand, within GFF2706at 395.123 kb on + strand, within GFF2706at 395.123 kb on + strand, within GFF2706at 395.124 kb on - strand, within GFF2706at 395.124 kb on - strand, within GFF2706at 395.199 kb on + strand, within GFF2706at 395.217 kb on + strand, within GFF2706at 395.217 kb on + strand, within GFF2706at 395.221 kb on + strand, within GFF2706at 395.221 kb on + strand, within GFF2706at 395.221 kb on + strand, within GFF2706at 395.221 kb on + strand, within GFF2706at 395.221 kb on + strand, within GFF2706at 395.221 kb on + strand, within GFF2706at 395.221 kb on + strand, within GFF2706at 395.221 kb on + strand, within GFF2706at 395.221 kb on + strand, within GFF2706at 395.221 kb on + strand, within GFF2706at 395.221 kb on + strand, within GFF2706at 395.222 kb on - strand, within GFF2706at 395.222 kb on - strand, within GFF2706at 395.222 kb on - strand, within GFF2706at 395.222 kb on - strand, within GFF2706at 395.222 kb on - strand, within GFF2706at 395.222 kb on - strand, within GFF2706at 395.222 kb on - strand, within GFF2706at 395.222 kb on - strand, within GFF2706at 395.222 kb on - strand, within GFF2706at 395.222 kb on - strand, within GFF2706at 395.222 kb on - strand, within GFF2706at 395.277 kb on + strand, within GFF2706at 395.277 kb on + strand, within GFF2706at 395.434 kb on - strand, within GFF2706at 395.451 kb on + strand, within GFF2706at 395.496 kb on + strand, within GFF2706at 395.496 kb on + strand, within GFF2706at 395.496 kb on + strand, within GFF2706at 395.497 kb on - strand, within GFF2706at 395.497 kb on - strand, within GFF2706at 395.497 kb on - strand, within GFF2706at 395.497 kb on - strand, within GFF2706at 395.497 kb on - strand, within GFF2706at 395.620 kb on - strand, within GFF2706at 395.698 kb on - strand, within GFF2706at 395.735 kb on + strand, within GFF2706at 395.736 kb on - strand, within GFF2706at 395.764 kb on - strand, within GFF2706at 395.764 kb on - strand, within GFF2706at 395.808 kb on + strand, within GFF2706at 395.808 kb on + strand, within GFF2706at 395.809 kb on - strand, within GFF2706at 395.809 kb on - strand, within GFF2706at 395.949 kb on + strand, within GFF2706at 395.950 kb on - strand, within GFF2706at 396.007 kb on + strand, within GFF2706at 396.007 kb on + strand, within GFF2706at 396.007 kb on + strand, within GFF2706at 396.007 kb on + strand, within GFF2706at 396.008 kb on - strand, within GFF2706at 396.021 kb on + strand, within GFF2706at 396.022 kb on - strand, within GFF2706at 396.033 kb on + strand, within GFF2706at 396.033 kb on + strand, within GFF2706at 396.033 kb on + strand, within GFF2706at 396.034 kb on - strand, within GFF2706at 396.090 kb on + strand, within GFF2706at 396.091 kb on - strand, within GFF2706at 396.091 kb on - strand, within GFF2706at 396.091 kb on - strand, within GFF2706at 396.237 kb on + strand, within GFF2706at 396.237 kb on + strand, within GFF2706at 396.238 kb on - strand, within GFF2706at 396.238 kb on - strand, within GFF2706at 396.264 kb on + strand, within GFF2706at 396.264 kb on + strand, within GFF2706at 396.265 kb on - strand, within GFF2706at 396.273 kb on + strand, within GFF2706at 396.273 kb on + strand, within GFF2706at 396.274 kb on - strand, within GFF2706at 396.274 kb on - strand, within GFF2706at 396.274 kb on - strand, within GFF2706at 396.348 kb on + strand, within GFF2706at 396.349 kb on - strand, within GFF2706at 396.366 kb on + strand, within GFF2706at 396.366 kb on + strand, within GFF2706at 396.366 kb on + strand, within GFF2706at 396.366 kb on + strand, within GFF2706at 396.367 kb on - strand, within GFF2706at 396.367 kb on - strand, within GFF2706at 396.463 kb on - strand, within GFF2706at 396.463 kb on - strand, within GFF2706at 396.463 kb on - strand, within GFF2706at 396.463 kb on - strand, within GFF2706at 396.555 kb on + strand, within GFF2706at 396.555 kb on + strand, within GFF2706at 396.556 kb on - strand, within GFF2706at 396.557 kb on + strand, within GFF2706at 396.557 kb on + strand, within GFF2706at 396.557 kb on + strand, within GFF2706at 396.558 kb on - strand, within GFF2706at 396.558 kb on - strand, within GFF2706at 396.558 kb on - strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.561 kb on + strand, within GFF2706at 396.562 kb on - strand, within GFF2706at 396.562 kb on - strand, within GFF2706at 396.618 kb on + strand, within GFF2706at 396.653 kb on + strand, within GFF2706at 396.654 kb on - strand, within GFF2706at 396.843 kb on + strandat 396.843 kb on + strandat 396.844 kb on - strandat 396.844 kb on - strandat 396.844 kb on - strandat 396.844 kb on - strandat 396.867 kb on + strandat 396.868 kb on - strandat 396.876 kb on + strandat 396.879 kb on + strandat 396.879 kb on + strandat 396.880 kb on - strandat 396.880 kb on - strandat 396.915 kb on + strandat 396.915 kb on + strandat 396.916 kb on - strandat 396.916 kb on - strandat 396.916 kb on - strandat 397.098 kb on + strand, within GFF2707at 397.098 kb on + strand, within GFF2707at 397.098 kb on + strand, within GFF2707at 397.098 kb on + strand, within GFF2707at 397.099 kb on - strand, within GFF2707at 397.099 kb on - strand, within GFF2707at 397.099 kb on - strand, within GFF2707at 397.103 kb on + strand, within GFF2707at 397.140 kb on - strand, within GFF2707at 397.143 kb on + strand, within GFF2707at 397.144 kb on - strand, within GFF2707at 397.344 kb on + strand, within GFF2707at 397.345 kb on - strand, within GFF2707at 397.345 kb on - strand, within GFF2707at 397.345 kb on - strand, within GFF2707at 397.422 kb on - strand, within GFF2707at 397.467 kb on + strand, within GFF2707at 397.485 kb on + strand, within GFF2707at 397.485 kb on + strand, within GFF2707at 397.486 kb on - strand, within GFF2707at 397.486 kb on - strand, within GFF2707

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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394,037 + GFF2705 0.28 -0.4
394,038 - GFF2705 0.28 +1.0
394,191 + GFF2705 0.59 -1.0
394,191 + GFF2705 0.59 -0.0
394,192 - GFF2705 0.59 -0.7
394,192 - GFF2705 0.59 -0.1
394,192 - GFF2705 0.59 -1.1
394,192 - GFF2705 0.59 -0.4
394,192 - GFF2705 0.59 -0.3
394,336 + GFF2705 0.88 +1.2
394,336 + GFF2705 0.88 -1.0
394,336 + GFF2705 0.88 +0.4
394,337 - GFF2705 0.89 -1.0
394,506 + -0.1
394,701 + -0.7
394,701 + +1.1
394,701 + -0.9
394,701 + -0.8
394,701 + -0.1
394,701 + -0.2
394,701 + -0.3
394,701 + +0.3
394,701 + +0.0
394,702 - -0.5
394,702 - -2.5
394,702 - +0.4
394,702 - +0.9
394,702 - -1.4
394,702 - +0.1
394,702 - -0.2
395,016 + GFF2706 0.21 -0.5
395,079 + GFF2706 0.24 +1.9
395,080 - GFF2706 0.24 +0.7
395,082 - GFF2706 0.24 +0.3
395,082 - GFF2706 0.24 +0.3
395,082 - GFF2706 0.24 -0.2
395,082 - GFF2706 0.24 -1.1
395,106 + GFF2706 0.25 -0.6
395,107 - GFF2706 0.25 -0.4
395,107 - GFF2706 0.25 +0.2
395,107 - GFF2706 0.25 -0.9
395,123 + GFF2706 0.26 +0.0
395,123 + GFF2706 0.26 +0.1
395,123 + GFF2706 0.26 +0.2
395,123 + GFF2706 0.26 -0.3
395,124 - GFF2706 0.26 -0.6
395,124 - GFF2706 0.26 -2.1
395,199 + GFF2706 0.29 +0.3
395,217 + GFF2706 0.30 -0.4
395,217 + GFF2706 0.30 -0.5
395,221 + GFF2706 0.30 +1.0
395,221 + GFF2706 0.30 -1.2
395,221 + GFF2706 0.30 -0.5
395,221 + GFF2706 0.30 -0.5
395,221 + GFF2706 0.30 +0.3
395,221 + GFF2706 0.30 -0.5
395,221 + GFF2706 0.30 +1.1
395,221 + GFF2706 0.30 +0.1
395,221 + GFF2706 0.30 +0.5
395,221 + GFF2706 0.30 -0.2
395,221 + GFF2706 0.30 -0.2
395,222 - GFF2706 0.30 +0.3
395,222 - GFF2706 0.30 -0.1
395,222 - GFF2706 0.30 +0.9
395,222 - GFF2706 0.30 -0.2
395,222 - GFF2706 0.30 -0.5
395,222 - GFF2706 0.30 -1.1
395,222 - GFF2706 0.30 -0.4
395,222 - GFF2706 0.30 -0.2
395,222 - GFF2706 0.30 +0.1
395,222 - GFF2706 0.30 +0.8
395,222 - GFF2706 0.30 +0.4
395,277 + GFF2706 0.32 -1.3
395,277 + GFF2706 0.32 +1.4
395,434 - GFF2706 0.38 +0.8
395,451 + GFF2706 0.39 -0.5
395,496 + GFF2706 0.41 -0.1
395,496 + GFF2706 0.41 +0.4
395,496 + GFF2706 0.41 -0.5
395,497 - GFF2706 0.41 +0.1
395,497 - GFF2706 0.41 +0.6
395,497 - GFF2706 0.41 +0.3
395,497 - GFF2706 0.41 -0.1
395,497 - GFF2706 0.41 -0.2
395,620 - GFF2706 0.46 -0.7
395,698 - GFF2706 0.49 -1.3
395,735 + GFF2706 0.51 -0.1
395,736 - GFF2706 0.51 -0.6
395,764 - GFF2706 0.52 +1.3
395,764 - GFF2706 0.52 -0.4
395,808 + GFF2706 0.54 -1.3
395,808 + GFF2706 0.54 +0.7
395,809 - GFF2706 0.54 +0.7
395,809 - GFF2706 0.54 -0.9
395,949 + GFF2706 0.60 +0.5
395,950 - GFF2706 0.60 +1.4
396,007 + GFF2706 0.62 +1.0
396,007 + GFF2706 0.62 -0.8
396,007 + GFF2706 0.62 -0.6
396,007 + GFF2706 0.62 +0.7
396,008 - GFF2706 0.62 -2.0
396,021 + GFF2706 0.63 +0.3
396,022 - GFF2706 0.63 +1.5
396,033 + GFF2706 0.63 +0.6
396,033 + GFF2706 0.63 -1.2
396,033 + GFF2706 0.63 +0.4
396,034 - GFF2706 0.63 -1.1
396,090 + GFF2706 0.66 +0.0
396,091 - GFF2706 0.66 +0.0
396,091 - GFF2706 0.66 +0.3
396,091 - GFF2706 0.66 -0.2
396,237 + GFF2706 0.72 -0.4
396,237 + GFF2706 0.72 -0.5
396,238 - GFF2706 0.72 -0.6
396,238 - GFF2706 0.72 +1.2
396,264 + GFF2706 0.73 -0.2
396,264 + GFF2706 0.73 +0.2
396,265 - GFF2706 0.73 -0.3
396,273 + GFF2706 0.73 -0.4
396,273 + GFF2706 0.73 -1.8
396,274 - GFF2706 0.73 +0.6
396,274 - GFF2706 0.73 +0.0
396,274 - GFF2706 0.73 +0.3
396,348 + GFF2706 0.76 -0.4
396,349 - GFF2706 0.76 -0.6
396,366 + GFF2706 0.77 -1.9
396,366 + GFF2706 0.77 +1.1
396,366 + GFF2706 0.77 -0.9
396,366 + GFF2706 0.77 -1.4
396,367 - GFF2706 0.77 -1.1
396,367 - GFF2706 0.77 -0.1
396,463 - GFF2706 0.81 +0.3
396,463 - GFF2706 0.81 +0.9
396,463 - GFF2706 0.81 +1.3
396,463 - GFF2706 0.81 -0.3
396,555 + GFF2706 0.85 +0.1
396,555 + GFF2706 0.85 -0.5
396,556 - GFF2706 0.85 +1.5
396,557 + GFF2706 0.85 -0.1
396,557 + GFF2706 0.85 +0.3
396,557 + GFF2706 0.85 -0.5
396,558 - GFF2706 0.85 -2.0
396,558 - GFF2706 0.85 -0.5
396,558 - GFF2706 0.85 -0.3
396,561 + GFF2706 0.85 -0.2
396,561 + GFF2706 0.85 -0.2
396,561 + GFF2706 0.85 -0.5
396,561 + GFF2706 0.85 -0.4
396,561 + GFF2706 0.85 +0.2
396,561 + GFF2706 0.85 -0.1
396,561 + GFF2706 0.85 +0.3
396,561 + GFF2706 0.85 +0.3
396,561 + GFF2706 0.85 -1.2
396,562 - GFF2706 0.85 -0.3
396,562 - GFF2706 0.85 -0.2
396,618 + GFF2706 0.87 +0.3
396,653 + GFF2706 0.89 -0.9
396,654 - GFF2706 0.89 +1.1
396,843 + -0.3
396,843 + +0.2
396,844 - +0.8
396,844 - -0.2
396,844 - -1.1
396,844 - +0.9
396,867 + -0.6
396,868 - +0.1
396,876 + +0.8
396,879 + -1.0
396,879 + +0.4
396,880 - -0.6
396,880 - -1.0
396,915 + -0.2
396,915 + +0.0
396,916 - -0.7
396,916 - +0.6
396,916 - -0.1
397,098 + GFF2707 0.18 -0.7
397,098 + GFF2707 0.18 -0.9
397,098 + GFF2707 0.18 -0.3
397,098 + GFF2707 0.18 -0.3
397,099 - GFF2707 0.18 +0.6
397,099 - GFF2707 0.18 +0.0
397,099 - GFF2707 0.18 -0.1
397,103 + GFF2707 0.18 -1.1
397,140 - GFF2707 0.22 -0.5
397,143 + GFF2707 0.23 +2.3
397,144 - GFF2707 0.23 -0.1
397,344 + GFF2707 0.45 +2.3
397,345 - GFF2707 0.45 +0.6
397,345 - GFF2707 0.45 +0.9
397,345 - GFF2707 0.45 -0.5
397,422 - GFF2707 0.53 +1.2
397,467 + GFF2707 0.58 -1.8
397,485 + GFF2707 0.60 -0.3
397,485 + GFF2707 0.60 -0.2
397,486 - GFF2707 0.60 -0.7
397,486 - GFF2707 0.60 +1.3

Or see this region's nucleotide sequence