Strain Fitness in Xanthobacter sp. DMC5 around GFF2685

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2684 and GFF2685 overlap by 4 nucleotidesGFF2685 and GFF2686 are separated by 11 nucleotidesGFF2686 and GFF2687 are separated by 79 nucleotides GFF2684 - CDP-paratose 2-epimerase, at 368,290 to 369,414 GFF2684 GFF2685 - dTDP-L-rhamnose 4-epimerase, at 369,411 to 370,508 GFF2685 GFF2686 - hypothetical protein, at 370,520 to 370,783 GFF2686 GFF2687 - hypothetical protein, at 370,863 to 372,602 GFF2687 Position (kb) 369 370 371Strain fitness (log2 ratio) -2 -1 0 1 2at 368.435 kb on + strand, within GFF2684at 368.435 kb on + strand, within GFF2684at 368.435 kb on + strand, within GFF2684at 368.435 kb on + strand, within GFF2684at 368.435 kb on + strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.436 kb on - strand, within GFF2684at 368.438 kb on + strand, within GFF2684at 368.438 kb on + strand, within GFF2684at 368.439 kb on - strand, within GFF2684at 368.439 kb on - strand, within GFF2684at 368.439 kb on - strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.606 kb on + strand, within GFF2684at 368.607 kb on - strand, within GFF2684at 368.607 kb on - strand, within GFF2684at 368.607 kb on - strand, within GFF2684at 368.670 kb on + strand, within GFF2684at 368.670 kb on + strand, within GFF2684at 368.670 kb on + strand, within GFF2684at 368.670 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.750 kb on + strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.751 kb on - strand, within GFF2684at 368.801 kb on + strand, within GFF2684at 368.801 kb on + strand, within GFF2684at 368.802 kb on - strand, within GFF2684at 368.802 kb on - strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.813 kb on + strand, within GFF2684at 368.814 kb on - strand, within GFF2684at 368.814 kb on - strand, within GFF2684at 368.814 kb on - strand, within GFF2684at 368.814 kb on - strand, within GFF2684at 368.843 kb on + strand, within GFF2684at 368.843 kb on + strand, within GFF2684at 368.843 kb on + strand, within GFF2684at 368.843 kb on + strand, within GFF2684at 368.844 kb on - strand, within GFF2684at 368.844 kb on - strand, within GFF2684at 368.960 kb on + strand, within GFF2684at 368.960 kb on + strand, within GFF2684at 368.960 kb on + strand, within GFF2684at 368.961 kb on - strand, within GFF2684at 368.961 kb on - strand, within GFF2684at 369.364 kb on - strandat 369.417 kb on + strandat 369.417 kb on + strandat 369.417 kb on + strandat 369.417 kb on + strandat 369.417 kb on + strandat 369.418 kb on - strandat 369.599 kb on - strand, within GFF2685at 369.599 kb on - strand, within GFF2685at 369.692 kb on + strand, within GFF2685at 369.692 kb on + strand, within GFF2685at 369.692 kb on + strand, within GFF2685at 369.692 kb on + strand, within GFF2685at 369.693 kb on - strand, within GFF2685at 369.693 kb on - strand, within GFF2685at 369.695 kb on + strand, within GFF2685at 369.695 kb on + strand, within GFF2685at 369.695 kb on + strand, within GFF2685at 369.696 kb on - strand, within GFF2685at 369.696 kb on - strand, within GFF2685at 369.696 kb on - strand, within GFF2685at 369.696 kb on - strand, within GFF2685at 369.696 kb on - strand, within GFF2685at 369.696 kb on - strand, within GFF2685at 369.697 kb on + strand, within GFF2685at 369.697 kb on + strand, within GFF2685at 369.698 kb on - strand, within GFF2685at 369.759 kb on + strand, within GFF2685at 369.759 kb on + strand, within GFF2685at 369.759 kb on + strand, within GFF2685at 369.759 kb on + strand, within GFF2685at 369.760 kb on - strand, within GFF2685at 369.760 kb on - strand, within GFF2685at 369.760 kb on - strand, within GFF2685at 369.855 kb on - strand, within GFF2685at 369.855 kb on - strand, within GFF2685at 369.856 kb on + strand, within GFF2685at 369.856 kb on + strand, within GFF2685at 369.886 kb on + strand, within GFF2685at 369.887 kb on - strand, within GFF2685at 369.926 kb on - strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.964 kb on + strand, within GFF2685at 369.965 kb on - strand, within GFF2685at 369.965 kb on - strand, within GFF2685at 369.965 kb on - strand, within GFF2685at 369.979 kb on + strand, within GFF2685at 369.979 kb on + strand, within GFF2685at 369.980 kb on - strand, within GFF2685at 370.123 kb on + strand, within GFF2685at 370.124 kb on - strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.138 kb on + strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.139 kb on - strand, within GFF2685at 370.234 kb on + strand, within GFF2685at 370.235 kb on - strand, within GFF2685at 370.235 kb on - strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.249 kb on + strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.250 kb on - strand, within GFF2685at 370.420 kb on - strandat 370.420 kb on - strandat 370.691 kb on - strand, within GFF2686at 370.996 kb on + strandat 370.996 kb on + strandat 370.996 kb on + strandat 370.996 kb on + strandat 370.997 kb on - strandat 371.088 kb on + strand, within GFF2687at 371.088 kb on + strand, within GFF2687at 371.089 kb on - strand, within GFF2687at 371.089 kb on - strand, within GFF2687at 371.115 kb on + strand, within GFF2687at 371.413 kb on + strand, within GFF2687at 371.413 kb on + strand, within GFF2687at 371.413 kb on + strand, within GFF2687at 371.413 kb on + strand, within GFF2687at 371.414 kb on - strand, within GFF2687at 371.459 kb on + strand, within GFF2687

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
368,435 + GFF2684 0.13 -0.9
368,435 + GFF2684 0.13 +0.1
368,435 + GFF2684 0.13 -0.1
368,435 + GFF2684 0.13 +0.2
368,435 + GFF2684 0.13 +0.5
368,436 - GFF2684 0.13 -0.2
368,436 - GFF2684 0.13 -0.2
368,436 - GFF2684 0.13 +0.1
368,436 - GFF2684 0.13 -0.5
368,436 - GFF2684 0.13 +0.8
368,438 + GFF2684 0.13 -0.1
368,438 + GFF2684 0.13 -0.9
368,439 - GFF2684 0.13 +0.1
368,439 - GFF2684 0.13 +0.5
368,439 - GFF2684 0.13 -1.3
368,606 + GFF2684 0.28 +0.6
368,606 + GFF2684 0.28 -0.1
368,606 + GFF2684 0.28 -0.1
368,606 + GFF2684 0.28 -0.0
368,606 + GFF2684 0.28 -0.4
368,606 + GFF2684 0.28 +0.3
368,606 + GFF2684 0.28 +1.4
368,607 - GFF2684 0.28 +0.0
368,607 - GFF2684 0.28 +0.2
368,607 - GFF2684 0.28 -0.7
368,670 + GFF2684 0.34 +0.0
368,670 + GFF2684 0.34 +0.9
368,670 + GFF2684 0.34 +0.2
368,670 + GFF2684 0.34 +0.3
368,750 + GFF2684 0.41 +0.4
368,750 + GFF2684 0.41 +0.3
368,750 + GFF2684 0.41 -1.9
368,750 + GFF2684 0.41 +0.6
368,750 + GFF2684 0.41 +0.0
368,750 + GFF2684 0.41 +1.5
368,751 - GFF2684 0.41 +0.3
368,751 - GFF2684 0.41 -0.9
368,751 - GFF2684 0.41 -0.7
368,751 - GFF2684 0.41 +0.2
368,751 - GFF2684 0.41 -0.6
368,751 - GFF2684 0.41 +0.3
368,751 - GFF2684 0.41 -0.5
368,751 - GFF2684 0.41 +0.2
368,751 - GFF2684 0.41 +1.1
368,801 + GFF2684 0.45 -0.6
368,801 + GFF2684 0.45 +0.1
368,802 - GFF2684 0.46 -1.5
368,802 - GFF2684 0.46 +1.0
368,813 + GFF2684 0.46 -0.6
368,813 + GFF2684 0.46 +0.3
368,813 + GFF2684 0.46 +0.2
368,813 + GFF2684 0.46 -0.5
368,813 + GFF2684 0.46 -1.2
368,814 - GFF2684 0.47 +1.0
368,814 - GFF2684 0.47 -0.9
368,814 - GFF2684 0.47 +0.5
368,814 - GFF2684 0.47 -0.3
368,843 + GFF2684 0.49 -0.4
368,843 + GFF2684 0.49 +0.4
368,843 + GFF2684 0.49 -0.7
368,843 + GFF2684 0.49 +0.5
368,844 - GFF2684 0.49 +0.4
368,844 - GFF2684 0.49 -0.0
368,960 + GFF2684 0.60 +0.8
368,960 + GFF2684 0.60 +1.3
368,960 + GFF2684 0.60 +0.3
368,961 - GFF2684 0.60 -0.2
368,961 - GFF2684 0.60 -1.0
369,364 - +1.3
369,417 + +1.5
369,417 + -0.4
369,417 + -1.2
369,417 + -0.9
369,417 + +0.1
369,418 - +0.1
369,599 - GFF2685 0.17 -0.8
369,599 - GFF2685 0.17 -0.4
369,692 + GFF2685 0.26 +0.2
369,692 + GFF2685 0.26 -1.1
369,692 + GFF2685 0.26 -0.0
369,692 + GFF2685 0.26 -0.4
369,693 - GFF2685 0.26 -1.0
369,693 - GFF2685 0.26 -0.8
369,695 + GFF2685 0.26 -0.5
369,695 + GFF2685 0.26 -0.9
369,695 + GFF2685 0.26 +0.5
369,696 - GFF2685 0.26 -0.7
369,696 - GFF2685 0.26 -0.7
369,696 - GFF2685 0.26 +0.7
369,696 - GFF2685 0.26 -1.6
369,696 - GFF2685 0.26 +0.3
369,696 - GFF2685 0.26 -0.5
369,697 + GFF2685 0.26 -0.2
369,697 + GFF2685 0.26 -0.8
369,698 - GFF2685 0.26 -1.2
369,759 + GFF2685 0.32 -0.8
369,759 + GFF2685 0.32 +0.2
369,759 + GFF2685 0.32 -0.7
369,759 + GFF2685 0.32 +0.1
369,760 - GFF2685 0.32 -0.8
369,760 - GFF2685 0.32 +0.1
369,760 - GFF2685 0.32 +0.2
369,855 - GFF2685 0.40 -0.6
369,855 - GFF2685 0.40 -0.3
369,856 + GFF2685 0.41 +0.3
369,856 + GFF2685 0.41 +0.3
369,886 + GFF2685 0.43 +0.3
369,887 - GFF2685 0.43 +0.6
369,926 - GFF2685 0.47 -0.5
369,964 + GFF2685 0.50 -0.9
369,964 + GFF2685 0.50 -0.3
369,964 + GFF2685 0.50 -0.2
369,964 + GFF2685 0.50 +0.5
369,964 + GFF2685 0.50 +0.7
369,964 + GFF2685 0.50 -0.5
369,964 + GFF2685 0.50 -0.7
369,964 + GFF2685 0.50 -0.2
369,965 - GFF2685 0.50 -0.7
369,965 - GFF2685 0.50 -0.7
369,965 - GFF2685 0.50 -0.5
369,979 + GFF2685 0.52 +0.1
369,979 + GFF2685 0.52 -0.3
369,980 - GFF2685 0.52 -2.1
370,123 + GFF2685 0.65 +0.7
370,124 - GFF2685 0.65 -0.1
370,138 + GFF2685 0.66 +1.0
370,138 + GFF2685 0.66 +1.0
370,138 + GFF2685 0.66 -0.4
370,138 + GFF2685 0.66 -0.8
370,138 + GFF2685 0.66 +0.5
370,139 - GFF2685 0.66 +0.3
370,139 - GFF2685 0.66 -0.4
370,139 - GFF2685 0.66 +0.9
370,139 - GFF2685 0.66 +0.2
370,139 - GFF2685 0.66 +0.7
370,234 + GFF2685 0.75 +0.7
370,235 - GFF2685 0.75 -1.1
370,235 - GFF2685 0.75 +0.3
370,249 + GFF2685 0.76 -0.9
370,249 + GFF2685 0.76 -0.5
370,249 + GFF2685 0.76 -0.4
370,249 + GFF2685 0.76 -1.0
370,249 + GFF2685 0.76 +0.4
370,249 + GFF2685 0.76 -1.0
370,249 + GFF2685 0.76 +0.5
370,249 + GFF2685 0.76 +0.1
370,249 + GFF2685 0.76 +0.6
370,249 + GFF2685 0.76 +0.2
370,249 + GFF2685 0.76 +1.7
370,249 + GFF2685 0.76 +0.1
370,250 - GFF2685 0.76 +2.3
370,250 - GFF2685 0.76 +1.3
370,250 - GFF2685 0.76 -0.1
370,250 - GFF2685 0.76 -0.9
370,250 - GFF2685 0.76 -0.2
370,250 - GFF2685 0.76 -0.5
370,250 - GFF2685 0.76 -0.3
370,250 - GFF2685 0.76 +1.5
370,250 - GFF2685 0.76 -2.3
370,420 - -0.5
370,420 - +0.8
370,691 - GFF2686 0.65 -1.1
370,996 + +0.3
370,996 + +0.6
370,996 + +0.3
370,996 + -0.1
370,997 - -1.0
371,088 + GFF2687 0.13 +0.6
371,088 + GFF2687 0.13 -0.1
371,089 - GFF2687 0.13 -0.5
371,089 - GFF2687 0.13 -0.8
371,115 + GFF2687 0.14 +0.7
371,413 + GFF2687 0.32 -0.0
371,413 + GFF2687 0.32 +0.3
371,413 + GFF2687 0.32 +0.7
371,413 + GFF2687 0.32 -1.5
371,414 - GFF2687 0.32 +0.2
371,459 + GFF2687 0.34 -1.1

Or see this region's nucleotide sequence