Strain Fitness in Xanthobacter sp. DMC5 around GFF2668

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2667 and GFF2668 are separated by 404 nucleotidesGFF2668 and GFF2669 are separated by 11 nucleotides GFF2667 - Gluconate 2-dehydrogenase cytochrome c subunit, at 351,099 to 352,325 GFF2667 GFF2668 - putative zinc-binding alcohol dehydrogenase, at 352,730 to 353,899 GFF2668 GFF2669 - NADH dehydrogenase-like protein, at 353,911 to 355,206 GFF2669 Position (kb) 352 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 351.752 kb on + strand, within GFF2667at 351.752 kb on + strand, within GFF2667at 351.753 kb on - strand, within GFF2667at 351.753 kb on - strand, within GFF2667at 351.808 kb on - strand, within GFF2667at 351.831 kb on + strand, within GFF2667at 351.894 kb on - strand, within GFF2667at 351.918 kb on + strand, within GFF2667at 351.918 kb on + strand, within GFF2667at 351.918 kb on + strand, within GFF2667at 351.918 kb on + strand, within GFF2667at 351.919 kb on - strand, within GFF2667at 351.919 kb on - strand, within GFF2667at 351.919 kb on - strand, within GFF2667at 351.964 kb on + strand, within GFF2667at 351.964 kb on + strand, within GFF2667at 351.964 kb on + strand, within GFF2667at 351.965 kb on - strand, within GFF2667at 351.965 kb on - strand, within GFF2667at 351.965 kb on - strand, within GFF2667at 351.965 kb on - strand, within GFF2667at 352.005 kb on + strand, within GFF2667at 352.005 kb on + strand, within GFF2667at 352.005 kb on + strand, within GFF2667at 352.005 kb on + strand, within GFF2667at 352.005 kb on + strand, within GFF2667at 352.005 kb on + strand, within GFF2667at 352.006 kb on - strand, within GFF2667at 352.006 kb on - strand, within GFF2667at 352.006 kb on - strand, within GFF2667at 352.006 kb on - strand, within GFF2667at 352.092 kb on + strand, within GFF2667at 352.106 kb on + strand, within GFF2667at 352.106 kb on + strand, within GFF2667at 352.106 kb on + strand, within GFF2667at 352.106 kb on + strand, within GFF2667at 352.107 kb on - strand, within GFF2667at 352.107 kb on - strand, within GFF2667at 352.107 kb on - strand, within GFF2667at 352.107 kb on - strand, within GFF2667at 352.136 kb on + strand, within GFF2667at 352.233 kb on + strandat 352.233 kb on + strandat 352.233 kb on + strandat 352.233 kb on + strandat 352.233 kb on + strandat 352.233 kb on + strandat 352.233 kb on + strandat 352.234 kb on - strandat 352.234 kb on - strandat 352.234 kb on - strandat 352.234 kb on - strandat 352.234 kb on - strandat 352.234 kb on - strandat 352.234 kb on - strandat 352.234 kb on - strandat 352.234 kb on - strandat 352.234 kb on - strandat 352.234 kb on - strandat 352.323 kb on + strandat 352.323 kb on + strandat 352.323 kb on + strandat 352.323 kb on + strandat 352.323 kb on + strandat 352.323 kb on + strandat 352.323 kb on + strandat 352.323 kb on + strandat 352.323 kb on + strandat 352.324 kb on - strandat 352.324 kb on - strandat 352.324 kb on - strandat 352.324 kb on - strandat 352.324 kb on - strandat 352.324 kb on - strandat 352.353 kb on + strandat 352.353 kb on + strandat 352.353 kb on + strandat 352.353 kb on + strandat 352.353 kb on + strandat 352.354 kb on - strandat 352.354 kb on - strandat 352.354 kb on - strandat 352.354 kb on - strandat 352.517 kb on + strandat 352.548 kb on + strandat 352.548 kb on + strandat 352.549 kb on - strandat 352.549 kb on - strandat 352.556 kb on + strandat 352.556 kb on + strandat 352.556 kb on + strandat 352.556 kb on + strandat 352.556 kb on + strandat 352.556 kb on + strandat 352.556 kb on + strandat 352.556 kb on + strandat 352.557 kb on - strandat 352.557 kb on - strandat 352.557 kb on - strandat 352.557 kb on - strandat 352.557 kb on - strandat 352.557 kb on - strandat 352.557 kb on - strandat 352.557 kb on - strandat 352.557 kb on - strandat 352.561 kb on + strandat 352.562 kb on - strandat 352.597 kb on + strandat 352.597 kb on + strandat 352.602 kb on - strandat 352.602 kb on - strandat 352.602 kb on - strandat 352.602 kb on - strandat 352.602 kb on - strandat 352.862 kb on + strand, within GFF2668at 352.862 kb on + strand, within GFF2668at 352.862 kb on + strand, within GFF2668at 352.862 kb on + strand, within GFF2668at 352.862 kb on + strand, within GFF2668at 352.862 kb on + strand, within GFF2668at 352.862 kb on + strand, within GFF2668at 352.863 kb on - strand, within GFF2668at 352.863 kb on - strand, within GFF2668at 352.863 kb on - strand, within GFF2668at 352.863 kb on - strand, within GFF2668at 352.863 kb on - strand, within GFF2668at 353.030 kb on + strand, within GFF2668at 353.030 kb on + strand, within GFF2668at 353.030 kb on + strand, within GFF2668at 353.030 kb on + strand, within GFF2668at 353.031 kb on - strand, within GFF2668at 353.031 kb on - strand, within GFF2668at 353.031 kb on - strand, within GFF2668at 353.087 kb on + strand, within GFF2668at 353.111 kb on + strand, within GFF2668at 353.132 kb on + strand, within GFF2668at 353.133 kb on - strand, within GFF2668at 353.153 kb on + strand, within GFF2668at 353.154 kb on - strand, within GFF2668at 353.154 kb on - strand, within GFF2668at 353.154 kb on - strand, within GFF2668at 353.168 kb on + strand, within GFF2668at 353.169 kb on - strand, within GFF2668at 353.253 kb on - strand, within GFF2668at 353.278 kb on - strand, within GFF2668at 353.278 kb on - strand, within GFF2668at 353.278 kb on - strand, within GFF2668at 353.278 kb on - strand, within GFF2668at 353.380 kb on + strand, within GFF2668at 353.380 kb on + strand, within GFF2668at 353.380 kb on + strand, within GFF2668at 353.380 kb on + strand, within GFF2668at 353.380 kb on + strand, within GFF2668at 353.381 kb on - strand, within GFF2668at 353.453 kb on + strand, within GFF2668at 353.453 kb on + strand, within GFF2668at 353.453 kb on + strand, within GFF2668at 353.454 kb on - strand, within GFF2668at 353.454 kb on - strand, within GFF2668at 353.454 kb on - strand, within GFF2668at 353.454 kb on - strand, within GFF2668at 353.543 kb on + strand, within GFF2668at 353.543 kb on + strand, within GFF2668at 353.543 kb on + strand, within GFF2668at 353.543 kb on + strand, within GFF2668at 353.544 kb on - strand, within GFF2668at 353.544 kb on - strand, within GFF2668at 353.660 kb on + strand, within GFF2668at 353.660 kb on + strand, within GFF2668at 353.681 kb on + strand, within GFF2668at 353.739 kb on + strand, within GFF2668at 353.740 kb on - strand, within GFF2668at 353.748 kb on - strand, within GFF2668at 353.843 kb on + strandat 353.843 kb on + strandat 353.843 kb on + strandat 353.843 kb on + strandat 354.059 kb on - strand, within GFF2669at 354.059 kb on - strand, within GFF2669at 354.214 kb on + strand, within GFF2669at 354.253 kb on + strand, within GFF2669at 354.253 kb on + strand, within GFF2669at 354.254 kb on - strand, within GFF2669at 354.254 kb on - strand, within GFF2669at 354.317 kb on - strand, within GFF2669at 354.571 kb on + strand, within GFF2669at 354.571 kb on + strand, within GFF2669at 354.572 kb on - strand, within GFF2669at 354.731 kb on + strand, within GFF2669at 354.732 kb on - strand, within GFF2669at 354.735 kb on + strand, within GFF2669at 354.735 kb on + strand, within GFF2669at 354.736 kb on - strand, within GFF2669at 354.736 kb on - strand, within GFF2669at 354.819 kb on + strand, within GFF2669at 354.889 kb on + strand, within GFF2669at 354.889 kb on + strand, within GFF2669at 354.890 kb on - strand, within GFF2669at 354.890 kb on - strand, within GFF2669at 354.890 kb on - strand, within GFF2669

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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351,752 + GFF2667 0.53 +0.2
351,752 + GFF2667 0.53 +0.3
351,753 - GFF2667 0.53 -0.4
351,753 - GFF2667 0.53 +0.8
351,808 - GFF2667 0.58 +0.3
351,831 + GFF2667 0.60 -1.1
351,894 - GFF2667 0.65 -0.8
351,918 + GFF2667 0.67 -0.4
351,918 + GFF2667 0.67 +0.5
351,918 + GFF2667 0.67 -0.8
351,918 + GFF2667 0.67 -0.1
351,919 - GFF2667 0.67 -1.3
351,919 - GFF2667 0.67 +0.6
351,919 - GFF2667 0.67 -0.4
351,964 + GFF2667 0.70 -0.9
351,964 + GFF2667 0.70 -0.8
351,964 + GFF2667 0.70 +0.2
351,965 - GFF2667 0.71 +0.6
351,965 - GFF2667 0.71 -0.2
351,965 - GFF2667 0.71 -1.1
351,965 - GFF2667 0.71 -1.2
352,005 + GFF2667 0.74 +0.2
352,005 + GFF2667 0.74 +0.6
352,005 + GFF2667 0.74 +0.6
352,005 + GFF2667 0.74 -1.2
352,005 + GFF2667 0.74 +0.8
352,005 + GFF2667 0.74 -0.4
352,006 - GFF2667 0.74 +0.2
352,006 - GFF2667 0.74 +1.6
352,006 - GFF2667 0.74 -1.0
352,006 - GFF2667 0.74 -0.3
352,092 + GFF2667 0.81 -0.6
352,106 + GFF2667 0.82 -0.3
352,106 + GFF2667 0.82 -1.1
352,106 + GFF2667 0.82 -3.5
352,106 + GFF2667 0.82 -0.7
352,107 - GFF2667 0.82 -1.3
352,107 - GFF2667 0.82 -0.7
352,107 - GFF2667 0.82 -0.5
352,107 - GFF2667 0.82 +0.7
352,136 + GFF2667 0.85 -0.4
352,233 + +0.1
352,233 + -0.9
352,233 + -0.1
352,233 + -0.0
352,233 + -2.6
352,233 + -1.6
352,233 + -0.0
352,234 - -0.2
352,234 - +1.0
352,234 - -0.3
352,234 - -0.1
352,234 - -0.1
352,234 - +0.2
352,234 - +0.4
352,234 - -0.3
352,234 - +0.1
352,234 - +0.3
352,234 - +0.3
352,323 + -0.5
352,323 + -0.4
352,323 + +0.2
352,323 + -0.3
352,323 + -0.7
352,323 + -1.6
352,323 + -0.1
352,323 + -0.4
352,323 + +0.7
352,324 - -1.4
352,324 - +2.1
352,324 - +0.4
352,324 - -0.8
352,324 - -0.1
352,324 - -0.6
352,353 + +0.1
352,353 + +0.8
352,353 + -0.2
352,353 + +0.0
352,353 + +0.2
352,354 - +0.9
352,354 - +0.1
352,354 - -0.7
352,354 - -2.4
352,517 + +0.6
352,548 + -0.9
352,548 + -0.3
352,549 - +2.0
352,549 - -0.1
352,556 + -0.5
352,556 + +1.4
352,556 + -0.4
352,556 + +0.1
352,556 + +0.7
352,556 + +0.6
352,556 + -0.5
352,556 + -1.4
352,557 - -0.1
352,557 - +0.5
352,557 - +0.6
352,557 - +0.3
352,557 - -0.6
352,557 - +0.1
352,557 - -0.7
352,557 - +0.1
352,557 - -0.3
352,561 + -0.8
352,562 - -0.3
352,597 + +1.3
352,597 + -0.5
352,602 - +0.8
352,602 - +0.3
352,602 - +0.1
352,602 - +1.1
352,602 - +1.6
352,862 + GFF2668 0.11 +0.2
352,862 + GFF2668 0.11 -0.2
352,862 + GFF2668 0.11 +0.8
352,862 + GFF2668 0.11 -1.1
352,862 + GFF2668 0.11 +1.7
352,862 + GFF2668 0.11 +0.2
352,862 + GFF2668 0.11 -0.4
352,863 - GFF2668 0.11 -1.0
352,863 - GFF2668 0.11 -0.6
352,863 - GFF2668 0.11 +1.6
352,863 - GFF2668 0.11 +0.7
352,863 - GFF2668 0.11 -0.2
353,030 + GFF2668 0.26 -1.3
353,030 + GFF2668 0.26 +0.7
353,030 + GFF2668 0.26 -0.6
353,030 + GFF2668 0.26 -0.1
353,031 - GFF2668 0.26 -0.1
353,031 - GFF2668 0.26 -0.0
353,031 - GFF2668 0.26 +0.5
353,087 + GFF2668 0.31 -0.1
353,111 + GFF2668 0.33 -0.3
353,132 + GFF2668 0.34 -1.2
353,133 - GFF2668 0.34 +0.5
353,153 + GFF2668 0.36 -0.7
353,154 - GFF2668 0.36 +0.2
353,154 - GFF2668 0.36 +1.1
353,154 - GFF2668 0.36 -1.5
353,168 + GFF2668 0.37 +0.6
353,169 - GFF2668 0.38 -0.1
353,253 - GFF2668 0.45 -0.1
353,278 - GFF2668 0.47 -0.8
353,278 - GFF2668 0.47 +0.3
353,278 - GFF2668 0.47 -0.7
353,278 - GFF2668 0.47 +0.3
353,380 + GFF2668 0.56 -2.9
353,380 + GFF2668 0.56 +0.3
353,380 + GFF2668 0.56 +2.5
353,380 + GFF2668 0.56 +0.2
353,380 + GFF2668 0.56 -0.6
353,381 - GFF2668 0.56 +0.6
353,453 + GFF2668 0.62 +0.4
353,453 + GFF2668 0.62 -1.3
353,453 + GFF2668 0.62 +0.8
353,454 - GFF2668 0.62 -0.9
353,454 - GFF2668 0.62 -0.4
353,454 - GFF2668 0.62 -0.1
353,454 - GFF2668 0.62 +0.9
353,543 + GFF2668 0.69 -0.6
353,543 + GFF2668 0.69 -0.8
353,543 + GFF2668 0.69 +2.0
353,543 + GFF2668 0.69 -0.3
353,544 - GFF2668 0.70 +0.2
353,544 - GFF2668 0.70 -1.3
353,660 + GFF2668 0.79 -1.5
353,660 + GFF2668 0.79 +0.2
353,681 + GFF2668 0.81 +1.9
353,739 + GFF2668 0.86 -0.8
353,740 - GFF2668 0.86 -1.0
353,748 - GFF2668 0.87 +1.4
353,843 + +0.3
353,843 + +0.4
353,843 + -0.7
353,843 + -0.3
354,059 - GFF2669 0.11 +0.0
354,059 - GFF2669 0.11 -0.3
354,214 + GFF2669 0.23 -0.8
354,253 + GFF2669 0.26 -0.3
354,253 + GFF2669 0.26 -1.8
354,254 - GFF2669 0.26 -0.1
354,254 - GFF2669 0.26 -0.8
354,317 - GFF2669 0.31 +0.0
354,571 + GFF2669 0.51 +0.3
354,571 + GFF2669 0.51 +0.5
354,572 - GFF2669 0.51 -0.0
354,731 + GFF2669 0.63 -1.3
354,732 - GFF2669 0.63 -0.5
354,735 + GFF2669 0.64 -0.4
354,735 + GFF2669 0.64 -0.4
354,736 - GFF2669 0.64 -0.9
354,736 - GFF2669 0.64 +0.0
354,819 + GFF2669 0.70 -1.3
354,889 + GFF2669 0.75 +0.1
354,889 + GFF2669 0.75 +0.9
354,890 - GFF2669 0.76 +0.1
354,890 - GFF2669 0.76 +0.2
354,890 - GFF2669 0.76 -0.3

Or see this region's nucleotide sequence