Strain Fitness in Xanthobacter sp. DMC5 around GFF2652

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2651 and GFF2652 are separated by 31 nucleotidesGFF2652 and GFF2653 overlap by 4 nucleotides GFF2651 - Methanol dehydrogenase [cytochrome c] subunit 1, at 338,207 to 339,928 GFF2651 GFF2652 - hypothetical protein, at 339,960 to 340,532 GFF2652 GFF2653 - Cytochrome c oxidase subunit 2, at 340,529 to 341,557 GFF2653 Position (kb) 339 340 341Strain fitness (log2 ratio) -2 -1 0 1 2at 338.963 kb on + strand, within GFF2651at 339.028 kb on + strand, within GFF2651at 339.028 kb on + strand, within GFF2651at 339.028 kb on + strand, within GFF2651at 339.029 kb on - strand, within GFF2651at 339.029 kb on - strand, within GFF2651at 339.029 kb on - strand, within GFF2651at 339.059 kb on - strand, within GFF2651at 339.074 kb on + strand, within GFF2651at 339.074 kb on + strand, within GFF2651at 339.074 kb on + strand, within GFF2651at 339.075 kb on - strand, within GFF2651at 339.075 kb on - strand, within GFF2651at 339.075 kb on - strand, within GFF2651at 339.075 kb on - strand, within GFF2651at 339.191 kb on + strand, within GFF2651at 339.192 kb on - strand, within GFF2651at 339.192 kb on - strand, within GFF2651at 339.192 kb on - strand, within GFF2651at 339.192 kb on - strand, within GFF2651at 339.197 kb on + strand, within GFF2651at 339.197 kb on + strand, within GFF2651at 339.197 kb on + strand, within GFF2651at 339.197 kb on + strand, within GFF2651at 339.197 kb on + strand, within GFF2651at 339.197 kb on + strand, within GFF2651at 339.198 kb on - strand, within GFF2651at 339.198 kb on - strand, within GFF2651at 339.198 kb on - strand, within GFF2651at 339.198 kb on - strand, within GFF2651at 339.198 kb on - strand, within GFF2651at 339.225 kb on + strand, within GFF2651at 339.226 kb on - strand, within GFF2651at 339.226 kb on - strand, within GFF2651at 339.226 kb on - strand, within GFF2651at 339.226 kb on - strand, within GFF2651at 339.226 kb on - strand, within GFF2651at 339.226 kb on - strand, within GFF2651at 339.243 kb on - strand, within GFF2651at 339.327 kb on + strand, within GFF2651at 339.327 kb on + strand, within GFF2651at 339.328 kb on - strand, within GFF2651at 339.328 kb on - strand, within GFF2651at 339.328 kb on - strand, within GFF2651at 339.410 kb on + strand, within GFF2651at 339.410 kb on + strand, within GFF2651at 339.410 kb on + strand, within GFF2651at 339.410 kb on + strand, within GFF2651at 339.411 kb on - strand, within GFF2651at 339.411 kb on - strand, within GFF2651at 339.411 kb on - strand, within GFF2651at 339.424 kb on + strand, within GFF2651at 339.424 kb on + strand, within GFF2651at 339.424 kb on + strand, within GFF2651at 339.424 kb on + strand, within GFF2651at 339.425 kb on - strand, within GFF2651at 339.463 kb on + strand, within GFF2651at 339.479 kb on + strand, within GFF2651at 339.479 kb on + strand, within GFF2651at 339.479 kb on + strand, within GFF2651at 339.479 kb on + strand, within GFF2651at 339.479 kb on + strand, within GFF2651at 339.479 kb on + strand, within GFF2651at 339.479 kb on + strand, within GFF2651at 339.479 kb on + strand, within GFF2651at 339.480 kb on - strand, within GFF2651at 339.480 kb on - strand, within GFF2651at 339.480 kb on - strand, within GFF2651at 339.480 kb on - strand, within GFF2651at 339.480 kb on - strand, within GFF2651at 339.480 kb on - strand, within GFF2651at 339.480 kb on - strand, within GFF2651at 339.480 kb on - strand, within GFF2651at 339.480 kb on - strand, within GFF2651at 339.480 kb on - strand, within GFF2651at 339.481 kb on + strand, within GFF2651at 339.564 kb on - strand, within GFF2651at 339.635 kb on + strand, within GFF2651at 339.761 kb on + strandat 339.761 kb on + strandat 339.761 kb on + strandat 339.761 kb on + strandat 339.762 kb on - strandat 339.762 kb on - strandat 339.762 kb on - strandat 339.762 kb on - strandat 339.859 kb on + strandat 339.859 kb on + strandat 339.859 kb on + strandat 339.860 kb on - strandat 339.860 kb on - strandat 339.994 kb on - strandat 340.016 kb on + strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.017 kb on - strandat 340.020 kb on + strand, within GFF2652at 340.020 kb on + strand, within GFF2652at 340.020 kb on + strand, within GFF2652at 340.020 kb on + strand, within GFF2652at 340.021 kb on - strand, within GFF2652at 340.021 kb on - strand, within GFF2652at 340.021 kb on - strand, within GFF2652at 340.021 kb on - strand, within GFF2652at 340.021 kb on - strand, within GFF2652at 340.041 kb on + strand, within GFF2652at 340.042 kb on - strand, within GFF2652at 340.042 kb on - strand, within GFF2652at 340.042 kb on - strand, within GFF2652at 340.101 kb on + strand, within GFF2652at 340.102 kb on - strand, within GFF2652at 340.102 kb on - strand, within GFF2652at 340.102 kb on - strand, within GFF2652at 340.188 kb on + strand, within GFF2652at 340.188 kb on + strand, within GFF2652at 340.189 kb on - strand, within GFF2652at 340.189 kb on - strand, within GFF2652at 340.189 kb on - strand, within GFF2652at 340.265 kb on + strand, within GFF2652at 340.269 kb on + strand, within GFF2652at 340.269 kb on + strand, within GFF2652at 340.269 kb on + strand, within GFF2652at 340.270 kb on - strand, within GFF2652at 340.301 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.380 kb on + strand, within GFF2652at 340.381 kb on - strand, within GFF2652at 340.381 kb on - strand, within GFF2652at 340.381 kb on - strand, within GFF2652at 340.381 kb on - strand, within GFF2652at 340.381 kb on - strand, within GFF2652at 340.381 kb on - strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.463 kb on + strand, within GFF2652at 340.489 kb on + strandat 340.523 kb on + strandat 340.523 kb on + strandat 340.946 kb on + strand, within GFF2653at 340.947 kb on - strand, within GFF2653at 341.438 kb on + strand, within GFF2653at 341.438 kb on + strand, within GFF2653at 341.438 kb on + strand, within GFF2653at 341.438 kb on + strand, within GFF2653at 341.439 kb on - strand, within GFF2653at 341.439 kb on - strand, within GFF2653at 341.488 kb on + strandat 341.488 kb on + strandat 341.489 kb on - strandat 341.489 kb on - strandat 341.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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338,963 + GFF2651 0.44 -1.3
339,028 + GFF2651 0.48 -0.4
339,028 + GFF2651 0.48 -1.8
339,028 + GFF2651 0.48 +0.1
339,029 - GFF2651 0.48 -0.5
339,029 - GFF2651 0.48 -0.1
339,029 - GFF2651 0.48 +0.1
339,059 - GFF2651 0.49 -0.3
339,074 + GFF2651 0.50 +0.6
339,074 + GFF2651 0.50 -0.4
339,074 + GFF2651 0.50 +0.1
339,075 - GFF2651 0.50 +0.1
339,075 - GFF2651 0.50 +0.2
339,075 - GFF2651 0.50 -0.4
339,075 - GFF2651 0.50 -0.5
339,191 + GFF2651 0.57 -0.7
339,192 - GFF2651 0.57 +2.1
339,192 - GFF2651 0.57 +0.6
339,192 - GFF2651 0.57 -1.1
339,192 - GFF2651 0.57 -0.5
339,197 + GFF2651 0.57 +0.1
339,197 + GFF2651 0.57 -0.1
339,197 + GFF2651 0.57 +0.3
339,197 + GFF2651 0.57 -0.6
339,197 + GFF2651 0.57 -0.1
339,197 + GFF2651 0.57 +1.3
339,198 - GFF2651 0.58 +0.1
339,198 - GFF2651 0.58 +0.9
339,198 - GFF2651 0.58 -0.4
339,198 - GFF2651 0.58 +0.5
339,198 - GFF2651 0.58 +0.2
339,225 + GFF2651 0.59 +0.6
339,226 - GFF2651 0.59 -0.4
339,226 - GFF2651 0.59 -0.1
339,226 - GFF2651 0.59 -0.4
339,226 - GFF2651 0.59 +0.6
339,226 - GFF2651 0.59 +0.7
339,226 - GFF2651 0.59 -0.6
339,243 - GFF2651 0.60 +0.5
339,327 + GFF2651 0.65 -0.5
339,327 + GFF2651 0.65 +1.1
339,328 - GFF2651 0.65 -0.6
339,328 - GFF2651 0.65 -1.3
339,328 - GFF2651 0.65 +0.6
339,410 + GFF2651 0.70 +0.4
339,410 + GFF2651 0.70 -0.3
339,410 + GFF2651 0.70 +0.2
339,410 + GFF2651 0.70 +0.3
339,411 - GFF2651 0.70 -0.7
339,411 - GFF2651 0.70 +0.5
339,411 - GFF2651 0.70 -0.0
339,424 + GFF2651 0.71 -0.5
339,424 + GFF2651 0.71 +0.8
339,424 + GFF2651 0.71 -0.3
339,424 + GFF2651 0.71 -0.2
339,425 - GFF2651 0.71 +0.4
339,463 + GFF2651 0.73 -0.4
339,479 + GFF2651 0.74 -0.4
339,479 + GFF2651 0.74 +1.0
339,479 + GFF2651 0.74 -0.7
339,479 + GFF2651 0.74 -1.0
339,479 + GFF2651 0.74 -0.9
339,479 + GFF2651 0.74 -1.8
339,479 + GFF2651 0.74 -0.0
339,479 + GFF2651 0.74 +0.1
339,480 - GFF2651 0.74 -0.0
339,480 - GFF2651 0.74 -0.7
339,480 - GFF2651 0.74 +0.2
339,480 - GFF2651 0.74 +0.2
339,480 - GFF2651 0.74 +1.3
339,480 - GFF2651 0.74 +0.4
339,480 - GFF2651 0.74 -0.7
339,480 - GFF2651 0.74 -0.5
339,480 - GFF2651 0.74 +0.5
339,480 - GFF2651 0.74 +0.4
339,481 + GFF2651 0.74 +0.8
339,564 - GFF2651 0.79 +1.0
339,635 + GFF2651 0.83 -0.5
339,761 + -0.3
339,761 + +1.5
339,761 + +0.2
339,761 + +0.3
339,762 - -0.2
339,762 - -0.5
339,762 - -1.2
339,762 - -0.5
339,859 + -0.0
339,859 + +0.8
339,859 + +0.4
339,860 - +0.5
339,860 - +0.2
339,994 - +0.4
340,016 + -0.8
340,017 - +0.1
340,017 - +0.6
340,017 - +0.5
340,017 - -0.7
340,017 - +1.1
340,017 - -0.4
340,017 - -0.3
340,017 - -1.6
340,020 + GFF2652 0.10 -0.2
340,020 + GFF2652 0.10 +0.9
340,020 + GFF2652 0.10 -0.2
340,020 + GFF2652 0.10 +0.3
340,021 - GFF2652 0.11 +0.3
340,021 - GFF2652 0.11 -0.0
340,021 - GFF2652 0.11 -1.0
340,021 - GFF2652 0.11 +0.4
340,021 - GFF2652 0.11 +0.3
340,041 + GFF2652 0.14 -0.8
340,042 - GFF2652 0.14 +0.0
340,042 - GFF2652 0.14 +0.2
340,042 - GFF2652 0.14 -0.5
340,101 + GFF2652 0.25 -0.9
340,102 - GFF2652 0.25 -0.6
340,102 - GFF2652 0.25 +1.1
340,102 - GFF2652 0.25 -1.3
340,188 + GFF2652 0.40 -1.0
340,188 + GFF2652 0.40 +0.6
340,189 - GFF2652 0.40 -0.3
340,189 - GFF2652 0.40 -0.8
340,189 - GFF2652 0.40 -0.1
340,265 + GFF2652 0.53 -0.1
340,269 + GFF2652 0.54 +0.5
340,269 + GFF2652 0.54 +0.5
340,269 + GFF2652 0.54 -0.9
340,270 - GFF2652 0.54 -0.1
340,301 + GFF2652 0.60 +1.1
340,380 + GFF2652 0.73 +2.3
340,380 + GFF2652 0.73 -0.0
340,380 + GFF2652 0.73 -1.5
340,380 + GFF2652 0.73 -0.2
340,380 + GFF2652 0.73 +0.3
340,380 + GFF2652 0.73 -0.2
340,380 + GFF2652 0.73 +0.4
340,380 + GFF2652 0.73 +0.3
340,380 + GFF2652 0.73 -0.1
340,381 - GFF2652 0.73 -0.4
340,381 - GFF2652 0.73 +1.3
340,381 - GFF2652 0.73 +0.2
340,381 - GFF2652 0.73 +0.3
340,381 - GFF2652 0.73 +0.5
340,381 - GFF2652 0.73 -0.2
340,463 + GFF2652 0.88 -0.3
340,463 + GFF2652 0.88 +0.8
340,463 + GFF2652 0.88 -0.0
340,463 + GFF2652 0.88 -0.3
340,463 + GFF2652 0.88 +0.3
340,463 + GFF2652 0.88 -0.3
340,463 + GFF2652 0.88 -1.4
340,463 + GFF2652 0.88 +2.3
340,489 + +0.3
340,523 + +0.6
340,523 + -1.6
340,946 + GFF2653 0.41 +0.5
340,947 - GFF2653 0.41 +1.6
341,438 + GFF2653 0.88 -2.5
341,438 + GFF2653 0.88 +0.8
341,438 + GFF2653 0.88 +1.5
341,438 + GFF2653 0.88 +0.0
341,439 - GFF2653 0.88 +0.2
341,439 - GFF2653 0.88 +0.1
341,488 + -1.6
341,488 + -0.1
341,489 - -0.5
341,489 - -0.7
341,489 - +1.3

Or see this region's nucleotide sequence