Strain Fitness in Xanthobacter sp. DMC5 around GFF2647

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2646 and GFF2647 are separated by 191 nucleotidesGFF2647 and GFF2648 are separated by 87 nucleotides GFF2646 - Inner membrane transport protein YdhP, at 331,189 to 332,436 GFF2646 GFF2647 - HTH-type transcriptional regulator DmlR, at 332,628 to 333,533 GFF2647 GFF2648 - Pyridoxal 4-dehydrogenase, at 333,621 to 334,634 GFF2648 Position (kb) 332 333 334Strain fitness (log2 ratio) -2 -1 0 1 2at 331.689 kb on + strand, within GFF2646at 331.689 kb on + strand, within GFF2646at 331.689 kb on + strand, within GFF2646at 331.689 kb on + strand, within GFF2646at 331.690 kb on - strand, within GFF2646at 331.690 kb on - strand, within GFF2646at 331.690 kb on - strand, within GFF2646at 331.691 kb on + strand, within GFF2646at 331.691 kb on + strand, within GFF2646at 331.691 kb on + strand, within GFF2646at 331.691 kb on + strand, within GFF2646at 331.691 kb on + strand, within GFF2646at 331.691 kb on + strand, within GFF2646at 331.692 kb on - strand, within GFF2646at 331.692 kb on - strand, within GFF2646at 331.755 kb on + strand, within GFF2646at 331.755 kb on + strand, within GFF2646at 331.755 kb on + strand, within GFF2646at 331.755 kb on + strand, within GFF2646at 331.755 kb on + strand, within GFF2646at 331.755 kb on + strand, within GFF2646at 331.756 kb on - strand, within GFF2646at 331.868 kb on + strand, within GFF2646at 331.868 kb on + strand, within GFF2646at 331.868 kb on + strand, within GFF2646at 331.869 kb on - strand, within GFF2646at 331.869 kb on - strand, within GFF2646at 331.869 kb on - strand, within GFF2646at 331.869 kb on - strand, within GFF2646at 332.024 kb on + strand, within GFF2646at 332.024 kb on + strand, within GFF2646at 332.024 kb on + strand, within GFF2646at 332.024 kb on + strand, within GFF2646at 332.025 kb on - strand, within GFF2646at 332.207 kb on + strand, within GFF2646at 332.208 kb on - strand, within GFF2646at 332.208 kb on - strand, within GFF2646at 332.208 kb on - strand, within GFF2646at 332.208 kb on - strand, within GFF2646at 332.518 kb on + strandat 332.519 kb on - strandat 332.588 kb on + strandat 332.588 kb on + strandat 332.588 kb on + strandat 332.589 kb on - strandat 332.589 kb on - strandat 332.762 kb on - strand, within GFF2647at 332.823 kb on + strand, within GFF2647at 332.826 kb on + strand, within GFF2647at 332.827 kb on - strand, within GFF2647at 332.982 kb on + strand, within GFF2647at 332.989 kb on - strand, within GFF2647at 333.005 kb on - strand, within GFF2647at 333.033 kb on + strand, within GFF2647at 333.033 kb on + strand, within GFF2647at 333.065 kb on - strand, within GFF2647at 333.141 kb on + strand, within GFF2647at 333.141 kb on + strand, within GFF2647at 333.302 kb on + strand, within GFF2647at 333.302 kb on + strand, within GFF2647at 333.302 kb on + strand, within GFF2647at 333.354 kb on + strand, within GFF2647at 333.354 kb on + strand, within GFF2647at 333.355 kb on - strand, within GFF2647at 333.564 kb on + strandat 333.621 kb on + strandat 333.886 kb on + strand, within GFF2648at 333.887 kb on - strand, within GFF2648at 333.887 kb on - strand, within GFF2648at 333.887 kb on - strand, within GFF2648at 333.925 kb on + strand, within GFF2648at 333.925 kb on + strand, within GFF2648at 333.926 kb on - strand, within GFF2648at 333.944 kb on + strand, within GFF2648at 334.012 kb on + strand, within GFF2648at 334.013 kb on - strand, within GFF2648at 334.157 kb on + strand, within GFF2648at 334.157 kb on + strand, within GFF2648at 334.157 kb on + strand, within GFF2648at 334.157 kb on + strand, within GFF2648at 334.195 kb on + strand, within GFF2648at 334.195 kb on + strand, within GFF2648at 334.195 kb on + strand, within GFF2648at 334.195 kb on + strand, within GFF2648at 334.195 kb on + strand, within GFF2648at 334.195 kb on + strand, within GFF2648at 334.196 kb on - strand, within GFF2648at 334.196 kb on - strand, within GFF2648at 334.196 kb on - strand, within GFF2648at 334.279 kb on + strand, within GFF2648at 334.280 kb on - strand, within GFF2648at 334.280 kb on - strand, within GFF2648at 334.292 kb on - strand, within GFF2648at 334.297 kb on + strand, within GFF2648at 334.298 kb on - strand, within GFF2648at 334.298 kb on - strand, within GFF2648at 334.327 kb on + strand, within GFF2648at 334.327 kb on + strand, within GFF2648at 334.328 kb on - strand, within GFF2648at 334.446 kb on + strand, within GFF2648at 334.447 kb on - strand, within GFF2648at 334.447 kb on - strand, within GFF2648at 334.483 kb on + strand, within GFF2648at 334.483 kb on + strand, within GFF2648at 334.483 kb on + strand, within GFF2648at 334.483 kb on + strand, within GFF2648at 334.484 kb on - strand, within GFF2648at 334.484 kb on - strand, within GFF2648at 334.484 kb on - strand, within GFF2648at 334.484 kb on - strand, within GFF2648at 334.502 kb on - strand, within GFF2648

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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331,689 + GFF2646 0.40 +0.8
331,689 + GFF2646 0.40 -0.2
331,689 + GFF2646 0.40 -0.1
331,689 + GFF2646 0.40 +0.4
331,690 - GFF2646 0.40 -0.7
331,690 - GFF2646 0.40 -1.0
331,690 - GFF2646 0.40 -0.4
331,691 + GFF2646 0.40 -0.9
331,691 + GFF2646 0.40 +0.3
331,691 + GFF2646 0.40 -0.2
331,691 + GFF2646 0.40 -0.8
331,691 + GFF2646 0.40 +0.2
331,691 + GFF2646 0.40 +0.2
331,692 - GFF2646 0.40 -0.6
331,692 - GFF2646 0.40 -0.5
331,755 + GFF2646 0.45 +0.7
331,755 + GFF2646 0.45 +0.2
331,755 + GFF2646 0.45 +1.2
331,755 + GFF2646 0.45 +0.5
331,755 + GFF2646 0.45 +1.1
331,755 + GFF2646 0.45 +1.3
331,756 - GFF2646 0.45 -0.5
331,868 + GFF2646 0.54 -0.7
331,868 + GFF2646 0.54 +0.2
331,868 + GFF2646 0.54 -1.0
331,869 - GFF2646 0.54 +0.0
331,869 - GFF2646 0.54 -0.3
331,869 - GFF2646 0.54 +1.0
331,869 - GFF2646 0.54 +0.5
332,024 + GFF2646 0.67 -1.1
332,024 + GFF2646 0.67 +0.1
332,024 + GFF2646 0.67 +0.6
332,024 + GFF2646 0.67 -0.2
332,025 - GFF2646 0.67 +0.4
332,207 + GFF2646 0.82 -0.0
332,208 - GFF2646 0.82 -0.4
332,208 - GFF2646 0.82 +1.4
332,208 - GFF2646 0.82 -0.1
332,208 - GFF2646 0.82 -0.5
332,518 + +0.2
332,519 - -0.1
332,588 + -0.0
332,588 + -0.7
332,588 + -0.0
332,589 - +0.7
332,589 - -0.3
332,762 - GFF2647 0.15 -2.2
332,823 + GFF2647 0.22 +0.2
332,826 + GFF2647 0.22 +0.7
332,827 - GFF2647 0.22 -0.3
332,982 + GFF2647 0.39 +0.6
332,989 - GFF2647 0.40 -0.9
333,005 - GFF2647 0.42 -0.5
333,033 + GFF2647 0.45 +0.7
333,033 + GFF2647 0.45 -0.3
333,065 - GFF2647 0.48 +0.0
333,141 + GFF2647 0.57 +0.6
333,141 + GFF2647 0.57 -2.2
333,302 + GFF2647 0.74 -0.1
333,302 + GFF2647 0.74 +1.1
333,302 + GFF2647 0.74 -1.7
333,354 + GFF2647 0.80 -0.3
333,354 + GFF2647 0.80 +0.1
333,355 - GFF2647 0.80 -0.5
333,564 + +0.8
333,621 + -0.5
333,886 + GFF2648 0.26 +0.3
333,887 - GFF2648 0.26 -0.1
333,887 - GFF2648 0.26 +0.6
333,887 - GFF2648 0.26 -1.2
333,925 + GFF2648 0.30 +0.3
333,925 + GFF2648 0.30 -0.5
333,926 - GFF2648 0.30 -0.4
333,944 + GFF2648 0.32 +0.0
334,012 + GFF2648 0.39 +0.3
334,013 - GFF2648 0.39 +1.5
334,157 + GFF2648 0.53 -0.3
334,157 + GFF2648 0.53 +0.3
334,157 + GFF2648 0.53 -0.3
334,157 + GFF2648 0.53 +0.6
334,195 + GFF2648 0.57 -0.5
334,195 + GFF2648 0.57 -2.4
334,195 + GFF2648 0.57 +0.5
334,195 + GFF2648 0.57 -1.6
334,195 + GFF2648 0.57 -1.0
334,195 + GFF2648 0.57 -0.3
334,196 - GFF2648 0.57 +0.1
334,196 - GFF2648 0.57 -1.2
334,196 - GFF2648 0.57 -1.0
334,279 + GFF2648 0.65 +0.5
334,280 - GFF2648 0.65 -0.6
334,280 - GFF2648 0.65 +0.4
334,292 - GFF2648 0.66 -0.2
334,297 + GFF2648 0.67 -0.3
334,298 - GFF2648 0.67 +0.2
334,298 - GFF2648 0.67 +0.8
334,327 + GFF2648 0.70 -1.0
334,327 + GFF2648 0.70 +0.1
334,328 - GFF2648 0.70 -0.6
334,446 + GFF2648 0.81 -0.0
334,447 - GFF2648 0.81 +0.2
334,447 - GFF2648 0.81 +0.1
334,483 + GFF2648 0.85 -1.4
334,483 + GFF2648 0.85 +0.3
334,483 + GFF2648 0.85 -1.1
334,483 + GFF2648 0.85 +1.9
334,484 - GFF2648 0.85 -1.0
334,484 - GFF2648 0.85 -0.1
334,484 - GFF2648 0.85 +0.2
334,484 - GFF2648 0.85 -0.5
334,502 - GFF2648 0.87 -0.9

Or see this region's nucleotide sequence