Strain Fitness in Xanthobacter sp. DMC5 around GFF2641

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2639 and GFF2640 are separated by 9 nucleotidesGFF2640 and GFF2641 overlap by 4 nucleotidesGFF2641 and GFF2642 overlap by 4 nucleotidesGFF2642 and GFF2643 overlap by 4 nucleotides GFF2638 - Type IV secretion system protein virB4, at 322,153 to 324,582 GFF2638 GFF2639 - hypothetical protein, at 324,579 to 325,313 GFF2639 GFF2640 - hypothetical protein, at 325,323 to 325,583 GFF2640 GFF2641 - hypothetical protein, at 325,580 to 326,860 GFF2641 GFF2642 - hypothetical protein, at 326,857 to 327,546 GFF2642 GFF2643 - hypothetical protein, at 327,543 to 328,595 GFF2643 Position (kb) 325 326 327Strain fitness (log2 ratio) -1 0 1 2 3at 324.658 kb on - strand, within GFF2639at 324.658 kb on - strand, within GFF2639at 324.658 kb on - strand, within GFF2639at 324.658 kb on - strand, within GFF2639at 324.658 kb on - strand, within GFF2639at 324.658 kb on - strand, within GFF2639at 324.667 kb on - strand, within GFF2639at 324.667 kb on - strand, within GFF2639at 324.667 kb on - strand, within GFF2639at 324.681 kb on + strand, within GFF2639at 324.681 kb on + strand, within GFF2639at 324.681 kb on + strand, within GFF2639at 324.682 kb on - strand, within GFF2639at 324.682 kb on - strand, within GFF2639at 324.682 kb on - strand, within GFF2639at 324.801 kb on + strand, within GFF2639at 324.801 kb on + strand, within GFF2639at 324.801 kb on + strand, within GFF2639at 324.801 kb on + strand, within GFF2639at 324.801 kb on + strand, within GFF2639at 324.802 kb on - strand, within GFF2639at 324.802 kb on - strand, within GFF2639at 324.802 kb on - strand, within GFF2639at 324.876 kb on + strand, within GFF2639at 324.877 kb on - strand, within GFF2639at 326.024 kb on - strand, within GFF2641at 326.261 kb on + strand, within GFF2641at 326.261 kb on + strand, within GFF2641at 326.261 kb on + strand, within GFF2641at 326.261 kb on + strand, within GFF2641at 326.261 kb on + strand, within GFF2641at 326.261 kb on + strand, within GFF2641at 326.262 kb on - strand, within GFF2641at 326.262 kb on - strand, within GFF2641at 326.262 kb on - strand, within GFF2641at 326.549 kb on + strand, within GFF2641at 326.549 kb on + strand, within GFF2641at 326.550 kb on - strand, within GFF2641at 326.866 kb on + strandat 326.866 kb on + strandat 326.866 kb on + strandat 326.866 kb on + strandat 326.867 kb on - strandat 326.867 kb on - strandat 326.867 kb on - strandat 326.887 kb on + strandat 326.887 kb on + strandat 326.917 kb on + strandat 327.238 kb on + strand, within GFF2642at 327.238 kb on + strand, within GFF2642at 327.238 kb on + strand, within GFF2642at 327.238 kb on + strand, within GFF2642at 327.238 kb on + strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.239 kb on - strand, within GFF2642at 327.244 kb on + strand, within GFF2642at 327.244 kb on + strand, within GFF2642at 327.244 kb on + strand, within GFF2642at 327.245 kb on - strand, within GFF2642at 327.280 kb on + strand, within GFF2642at 327.280 kb on + strand, within GFF2642at 327.280 kb on + strand, within GFF2642at 327.281 kb on - strand, within GFF2642at 327.281 kb on - strand, within GFF2642at 327.609 kb on - strandat 327.609 kb on - strandat 327.690 kb on + strand, within GFF2643at 327.690 kb on + strand, within GFF2643at 327.691 kb on - strand, within GFF2643at 327.834 kb on - strand, within GFF2643

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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324,658 - GFF2639 0.11 -1.4
324,658 - GFF2639 0.11 +1.0
324,658 - GFF2639 0.11 -0.0
324,658 - GFF2639 0.11 -0.1
324,658 - GFF2639 0.11 -0.5
324,658 - GFF2639 0.11 +0.7
324,667 - GFF2639 0.12 +0.1
324,667 - GFF2639 0.12 -1.1
324,667 - GFF2639 0.12 +0.3
324,681 + GFF2639 0.14 +0.3
324,681 + GFF2639 0.14 -1.2
324,681 + GFF2639 0.14 -0.1
324,682 - GFF2639 0.14 +0.6
324,682 - GFF2639 0.14 -0.3
324,682 - GFF2639 0.14 +0.3
324,801 + GFF2639 0.30 -0.6
324,801 + GFF2639 0.30 -1.1
324,801 + GFF2639 0.30 +1.9
324,801 + GFF2639 0.30 +0.1
324,801 + GFF2639 0.30 +0.9
324,802 - GFF2639 0.30 -0.2
324,802 - GFF2639 0.30 +0.5
324,802 - GFF2639 0.30 -0.1
324,876 + GFF2639 0.40 -0.2
324,877 - GFF2639 0.41 +0.1
326,024 - GFF2641 0.35 +0.3
326,261 + GFF2641 0.53 +2.4
326,261 + GFF2641 0.53 +2.3
326,261 + GFF2641 0.53 +3.0
326,261 + GFF2641 0.53 -0.2
326,261 + GFF2641 0.53 +1.8
326,261 + GFF2641 0.53 +0.9
326,262 - GFF2641 0.53 +0.7
326,262 - GFF2641 0.53 +0.3
326,262 - GFF2641 0.53 +0.1
326,549 + GFF2641 0.76 +2.4
326,549 + GFF2641 0.76 +3.6
326,550 - GFF2641 0.76 +0.0
326,866 + +0.4
326,866 + -0.5
326,866 + -0.5
326,866 + -1.7
326,867 - +1.1
326,867 - +0.4
326,867 - +1.0
326,887 + +1.9
326,887 + +0.8
326,917 + +0.7
327,238 + GFF2642 0.55 -0.5
327,238 + GFF2642 0.55 +0.0
327,238 + GFF2642 0.55 +0.6
327,238 + GFF2642 0.55 +0.4
327,238 + GFF2642 0.55 +0.6
327,239 - GFF2642 0.55 -0.1
327,239 - GFF2642 0.55 -1.0
327,239 - GFF2642 0.55 -1.4
327,239 - GFF2642 0.55 -0.6
327,239 - GFF2642 0.55 -0.8
327,239 - GFF2642 0.55 -0.5
327,244 + GFF2642 0.56 +3.0
327,244 + GFF2642 0.56 +1.4
327,244 + GFF2642 0.56 -0.4
327,245 - GFF2642 0.56 +0.6
327,280 + GFF2642 0.61 -0.4
327,280 + GFF2642 0.61 +2.3
327,280 + GFF2642 0.61 +2.6
327,281 - GFF2642 0.61 +2.1
327,281 - GFF2642 0.61 -1.2
327,609 - -0.0
327,609 - +0.1
327,690 + GFF2643 0.14 -1.1
327,690 + GFF2643 0.14 +0.3
327,691 - GFF2643 0.14 +0.5
327,834 - GFF2643 0.28 +0.6

Or see this region's nucleotide sequence