Strain Fitness in Xanthobacter sp. DMC5 around GFF2616

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2614 and GFF2615 overlap by 4 nucleotidesGFF2615 and GFF2616 are separated by 45 nucleotidesGFF2616 and GFF2617 are separated by 243 nucleotides GFF2614 - hypothetical protein, at 296,709 to 297,239 GFF2614 GFF2615 - hypothetical protein, at 297,236 to 297,781 GFF2615 GFF2616 - hypothetical protein, at 297,827 to 298,612 GFF2616 GFF2617 - hypothetical protein, at 298,856 to 300,595 GFF2617 Position (kb) 297 298 299Strain fitness (log2 ratio) -2 -1 0 1at 296.998 kb on - strand, within GFF2614at 296.998 kb on - strand, within GFF2614at 297.099 kb on - strand, within GFF2614at 297.186 kb on + strand, within GFF2614at 297.186 kb on + strand, within GFF2614at 297.186 kb on + strand, within GFF2614at 297.187 kb on - strandat 297.187 kb on - strandat 297.266 kb on + strandat 297.266 kb on + strandat 297.266 kb on + strandat 297.267 kb on - strandat 297.267 kb on - strandat 297.267 kb on - strandat 297.267 kb on - strandat 297.267 kb on - strandat 297.359 kb on + strand, within GFF2615at 297.359 kb on + strand, within GFF2615at 297.360 kb on - strand, within GFF2615at 297.360 kb on - strand, within GFF2615at 297.360 kb on - strand, within GFF2615at 297.360 kb on - strand, within GFF2615at 297.360 kb on - strand, within GFF2615at 297.360 kb on - strand, within GFF2615at 297.452 kb on + strand, within GFF2615at 297.453 kb on - strand, within GFF2615at 297.453 kb on - strand, within GFF2615at 297.453 kb on - strand, within GFF2615at 297.453 kb on - strand, within GFF2615at 297.552 kb on - strand, within GFF2615at 297.677 kb on + strand, within GFF2615at 297.678 kb on - strand, within GFF2615at 297.729 kb on - strandat 298.175 kb on + strand, within GFF2616at 298.176 kb on - strand, within GFF2616at 298.232 kb on + strand, within GFF2616at 298.232 kb on + strand, within GFF2616at 298.256 kb on + strand, within GFF2616at 298.283 kb on + strand, within GFF2616at 298.283 kb on + strand, within GFF2616at 298.284 kb on - strand, within GFF2616at 298.284 kb on - strand, within GFF2616at 298.284 kb on - strand, within GFF2616at 298.284 kb on - strand, within GFF2616at 298.284 kb on - strand, within GFF2616at 298.632 kb on + strandat 298.632 kb on + strandat 298.632 kb on + strandat 298.633 kb on - strandat 298.633 kb on - strandat 298.633 kb on - strandat 298.633 kb on - strandat 298.707 kb on + strandat 298.755 kb on + strandat 298.814 kb on + strandat 298.814 kb on + strandat 298.815 kb on - strandat 298.856 kb on - strandat 299.098 kb on - strand, within GFF2617at 299.098 kb on - strand, within GFF2617at 299.098 kb on - strand, within GFF2617at 299.107 kb on + strand, within GFF2617at 299.107 kb on + strand, within GFF2617at 299.108 kb on - strand, within GFF2617at 299.144 kb on + strand, within GFF2617at 299.144 kb on + strand, within GFF2617at 299.144 kb on + strand, within GFF2617at 299.145 kb on - strand, within GFF2617at 299.145 kb on - strand, within GFF2617at 299.164 kb on - strand, within GFF2617at 299.413 kb on + strand, within GFF2617at 299.413 kb on + strand, within GFF2617at 299.413 kb on + strand, within GFF2617at 299.413 kb on + strand, within GFF2617at 299.435 kb on + strand, within GFF2617at 299.468 kb on + strand, within GFF2617at 299.468 kb on + strand, within GFF2617at 299.468 kb on + strand, within GFF2617at 299.468 kb on + strand, within GFF2617at 299.468 kb on + strand, within GFF2617at 299.468 kb on + strand, within GFF2617at 299.469 kb on - strand, within GFF2617at 299.469 kb on - strand, within GFF2617at 299.469 kb on - strand, within GFF2617at 299.469 kb on - strand, within GFF2617at 299.469 kb on - strand, within GFF2617at 299.469 kb on - strand, within GFF2617

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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296,998 - GFF2614 0.54 -0.3
296,998 - GFF2614 0.54 -0.0
297,099 - GFF2614 0.73 -0.0
297,186 + GFF2614 0.90 -0.4
297,186 + GFF2614 0.90 +0.2
297,186 + GFF2614 0.90 +0.6
297,187 - -2.2
297,187 - +1.3
297,266 + -1.6
297,266 + -0.3
297,266 + +0.4
297,267 - +1.1
297,267 - +0.6
297,267 - +0.6
297,267 - -0.9
297,267 - -0.9
297,359 + GFF2615 0.23 +0.1
297,359 + GFF2615 0.23 +0.4
297,360 - GFF2615 0.23 +0.2
297,360 - GFF2615 0.23 -1.2
297,360 - GFF2615 0.23 +1.1
297,360 - GFF2615 0.23 -0.4
297,360 - GFF2615 0.23 +0.7
297,360 - GFF2615 0.23 -1.9
297,452 + GFF2615 0.40 -0.6
297,453 - GFF2615 0.40 +0.1
297,453 - GFF2615 0.40 -0.1
297,453 - GFF2615 0.40 -1.7
297,453 - GFF2615 0.40 +0.0
297,552 - GFF2615 0.58 +1.6
297,677 + GFF2615 0.81 -0.8
297,678 - GFF2615 0.81 -0.3
297,729 - -1.4
298,175 + GFF2616 0.44 +0.9
298,176 - GFF2616 0.44 -0.7
298,232 + GFF2616 0.52 +1.0
298,232 + GFF2616 0.52 -0.2
298,256 + GFF2616 0.55 +1.3
298,283 + GFF2616 0.58 -0.7
298,283 + GFF2616 0.58 -0.3
298,284 - GFF2616 0.58 -0.2
298,284 - GFF2616 0.58 +0.3
298,284 - GFF2616 0.58 +0.5
298,284 - GFF2616 0.58 +0.2
298,284 - GFF2616 0.58 +0.4
298,632 + -0.9
298,632 + -1.5
298,632 + +0.1
298,633 - -1.4
298,633 - +0.4
298,633 - -0.1
298,633 - -1.6
298,707 + +1.0
298,755 + +1.5
298,814 + +1.3
298,814 + -1.1
298,815 - +0.0
298,856 - +0.6
299,098 - GFF2617 0.14 -0.5
299,098 - GFF2617 0.14 -0.3
299,098 - GFF2617 0.14 -2.5
299,107 + GFF2617 0.14 +0.3
299,107 + GFF2617 0.14 +0.5
299,108 - GFF2617 0.14 +0.3
299,144 + GFF2617 0.17 -0.3
299,144 + GFF2617 0.17 +0.0
299,144 + GFF2617 0.17 -0.6
299,145 - GFF2617 0.17 -0.9
299,145 - GFF2617 0.17 -0.8
299,164 - GFF2617 0.18 -0.6
299,413 + GFF2617 0.32 -0.7
299,413 + GFF2617 0.32 +0.4
299,413 + GFF2617 0.32 +0.5
299,413 + GFF2617 0.32 -0.1
299,435 + GFF2617 0.33 +0.1
299,468 + GFF2617 0.35 +0.1
299,468 + GFF2617 0.35 +0.5
299,468 + GFF2617 0.35 -1.1
299,468 + GFF2617 0.35 -1.0
299,468 + GFF2617 0.35 +0.6
299,468 + GFF2617 0.35 +0.7
299,469 - GFF2617 0.35 +0.2
299,469 - GFF2617 0.35 -1.0
299,469 - GFF2617 0.35 +0.5
299,469 - GFF2617 0.35 -0.2
299,469 - GFF2617 0.35 +1.0
299,469 - GFF2617 0.35 +0.2

Or see this region's nucleotide sequence