Strain Fitness in Xanthobacter sp. DMC5 around GFF2609

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2606 and GFF2607 are separated by 57 nucleotidesGFF2607 and GFF2608 are separated by 206 nucleotidesGFF2608 and GFF2609 are separated by 126 nucleotidesGFF2609 and GFF2610 are separated by 120 nucleotidesGFF2610 and GFF2611 are separated by 14 nucleotides GFF2606 - hypothetical protein, at 292,280 to 292,606 GFF2606 GFF2607 - hypothetical protein, at 292,664 to 292,882 GFF2607 GFF2608 - hypothetical protein, at 293,089 to 293,346 GFF2608 GFF2609 - hypothetical protein, at 293,473 to 294,261 GFF2609 GFF2610 - hypothetical protein, at 294,382 to 294,660 GFF2610 GFF2611 - hypothetical protein, at 294,675 to 295,814 GFF2611 Position (kb) 293 294 295Strain fitness (log2 ratio) -2 -1 0 1 2at 292.527 kb on - strand, within GFF2606at 292.527 kb on - strand, within GFF2606at 292.552 kb on + strand, within GFF2606at 292.552 kb on + strand, within GFF2606at 292.646 kb on + strandat 292.646 kb on + strandat 292.646 kb on + strandat 292.646 kb on + strandat 292.647 kb on - strandat 292.728 kb on + strand, within GFF2607at 292.728 kb on + strand, within GFF2607at 292.777 kb on + strand, within GFF2607at 292.777 kb on + strand, within GFF2607at 292.777 kb on + strand, within GFF2607at 292.777 kb on + strand, within GFF2607at 292.778 kb on - strand, within GFF2607at 292.778 kb on - strand, within GFF2607at 292.778 kb on - strand, within GFF2607at 292.779 kb on + strand, within GFF2607at 292.779 kb on + strand, within GFF2607at 292.779 kb on + strand, within GFF2607at 292.779 kb on + strand, within GFF2607at 292.780 kb on - strand, within GFF2607at 292.876 kb on + strandat 292.876 kb on + strandat 292.876 kb on + strandat 292.877 kb on - strandat 292.918 kb on - strandat 292.924 kb on + strandat 292.924 kb on + strandat 292.925 kb on - strandat 292.926 kb on + strandat 292.927 kb on - strandat 292.929 kb on + strandat 292.929 kb on + strandat 292.929 kb on + strandat 292.929 kb on + strandat 292.929 kb on + strandat 292.930 kb on - strandat 292.930 kb on - strandat 292.933 kb on + strandat 292.934 kb on - strandat 292.934 kb on - strandat 292.934 kb on - strandat 292.955 kb on + strandat 293.045 kb on + strandat 293.045 kb on + strandat 293.165 kb on - strand, within GFF2608at 293.165 kb on - strand, within GFF2608at 293.165 kb on - strand, within GFF2608at 293.268 kb on + strand, within GFF2608at 293.268 kb on + strand, within GFF2608at 293.268 kb on + strand, within GFF2608at 293.268 kb on + strand, within GFF2608at 293.268 kb on + strand, within GFF2608at 293.268 kb on + strand, within GFF2608at 293.269 kb on - strand, within GFF2608at 293.269 kb on - strand, within GFF2608at 293.269 kb on - strand, within GFF2608at 293.270 kb on + strand, within GFF2608at 293.270 kb on + strand, within GFF2608at 293.270 kb on + strand, within GFF2608at 293.270 kb on + strand, within GFF2608at 293.271 kb on - strand, within GFF2608at 293.271 kb on - strand, within GFF2608at 293.271 kb on - strand, within GFF2608at 293.271 kb on - strand, within GFF2608at 293.271 kb on - strand, within GFF2608at 293.317 kb on + strand, within GFF2608at 293.318 kb on - strand, within GFF2608at 293.318 kb on - strand, within GFF2608at 293.318 kb on - strand, within GFF2608at 293.318 kb on - strand, within GFF2608at 293.484 kb on + strandat 293.485 kb on - strandat 293.485 kb on - strandat 293.512 kb on + strandat 293.512 kb on + strandat 293.512 kb on + strandat 293.512 kb on + strandat 293.512 kb on + strandat 293.512 kb on + strandat 293.512 kb on + strandat 293.513 kb on - strandat 293.513 kb on - strandat 293.513 kb on - strandat 293.518 kb on + strandat 293.519 kb on - strandat 293.590 kb on + strand, within GFF2609at 293.591 kb on - strand, within GFF2609at 293.591 kb on - strand, within GFF2609at 293.937 kb on + strand, within GFF2609at 293.937 kb on + strand, within GFF2609at 293.937 kb on + strand, within GFF2609at 293.937 kb on + strand, within GFF2609at 293.937 kb on + strand, within GFF2609at 293.938 kb on - strand, within GFF2609at 293.938 kb on - strand, within GFF2609at 294.080 kb on + strand, within GFF2609at 294.081 kb on - strand, within GFF2609at 294.081 kb on - strand, within GFF2609at 294.081 kb on - strand, within GFF2609at 294.104 kb on + strand, within GFF2609at 294.207 kb on - strandat 294.207 kb on - strandat 294.207 kb on - strandat 294.239 kb on + strandat 294.239 kb on + strandat 294.239 kb on + strandat 294.240 kb on - strandat 294.240 kb on - strandat 294.240 kb on - strandat 294.530 kb on - strand, within GFF2610at 294.530 kb on - strand, within GFF2610at 294.651 kb on - strandat 294.651 kb on - strandat 294.651 kb on - strandat 294.777 kb on + strandat 294.778 kb on - strandat 294.778 kb on - strandat 294.823 kb on - strand, within GFF2611at 294.981 kb on + strand, within GFF2611at 295.027 kb on - strand, within GFF2611at 295.027 kb on - strand, within GFF2611at 295.201 kb on - strand, within GFF2611at 295.201 kb on - strand, within GFF2611at 295.201 kb on - strand, within GFF2611at 295.201 kb on - strand, within GFF2611at 295.248 kb on + strand, within GFF2611

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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292,527 - GFF2606 0.76 -0.1
292,527 - GFF2606 0.76 -0.1
292,552 + GFF2606 0.83 -0.4
292,552 + GFF2606 0.83 -1.5
292,646 + -0.5
292,646 + +0.7
292,646 + +0.3
292,646 + +0.3
292,647 - +0.9
292,728 + GFF2607 0.29 +0.0
292,728 + GFF2607 0.29 +0.3
292,777 + GFF2607 0.52 +1.9
292,777 + GFF2607 0.52 +0.4
292,777 + GFF2607 0.52 -0.3
292,777 + GFF2607 0.52 +1.2
292,778 - GFF2607 0.52 +0.2
292,778 - GFF2607 0.52 +0.4
292,778 - GFF2607 0.52 +1.4
292,779 + GFF2607 0.53 -0.5
292,779 + GFF2607 0.53 -0.3
292,779 + GFF2607 0.53 -0.4
292,779 + GFF2607 0.53 +0.1
292,780 - GFF2607 0.53 +1.1
292,876 + +0.3
292,876 + -0.2
292,876 + -1.0
292,877 - -0.3
292,918 - -1.8
292,924 + -0.5
292,924 + +0.3
292,925 - -0.0
292,926 + +0.2
292,927 - -0.8
292,929 + +0.3
292,929 + +1.9
292,929 + -2.3
292,929 + -1.3
292,929 + -1.0
292,930 - -0.2
292,930 - -0.2
292,933 + +0.3
292,934 - -1.0
292,934 - -0.5
292,934 - +0.4
292,955 + +0.4
293,045 + -1.0
293,045 + -0.5
293,165 - GFF2608 0.29 -1.8
293,165 - GFF2608 0.29 -1.0
293,165 - GFF2608 0.29 -0.0
293,268 + GFF2608 0.69 -1.1
293,268 + GFF2608 0.69 +0.1
293,268 + GFF2608 0.69 -0.8
293,268 + GFF2608 0.69 +0.4
293,268 + GFF2608 0.69 -1.0
293,268 + GFF2608 0.69 +2.0
293,269 - GFF2608 0.70 +0.1
293,269 - GFF2608 0.70 +0.1
293,269 - GFF2608 0.70 +0.7
293,270 + GFF2608 0.70 -0.3
293,270 + GFF2608 0.70 +0.4
293,270 + GFF2608 0.70 +0.7
293,270 + GFF2608 0.70 +1.0
293,271 - GFF2608 0.71 -0.5
293,271 - GFF2608 0.71 -1.4
293,271 - GFF2608 0.71 -0.3
293,271 - GFF2608 0.71 +0.5
293,271 - GFF2608 0.71 -0.0
293,317 + GFF2608 0.88 +0.6
293,318 - GFF2608 0.89 +0.7
293,318 - GFF2608 0.89 -1.0
293,318 - GFF2608 0.89 -1.0
293,318 - GFF2608 0.89 +0.3
293,484 + -0.2
293,485 - +0.4
293,485 - +0.2
293,512 + +0.3
293,512 + +1.7
293,512 + -0.4
293,512 + -0.7
293,512 + -0.8
293,512 + +1.1
293,512 + +1.0
293,513 - -0.1
293,513 - +0.2
293,513 - +0.6
293,518 + -0.7
293,519 - -1.2
293,590 + GFF2609 0.15 -0.1
293,591 - GFF2609 0.15 +0.0
293,591 - GFF2609 0.15 -1.9
293,937 + GFF2609 0.59 +0.2
293,937 + GFF2609 0.59 +0.4
293,937 + GFF2609 0.59 +0.4
293,937 + GFF2609 0.59 -1.6
293,937 + GFF2609 0.59 -0.9
293,938 - GFF2609 0.59 +0.6
293,938 - GFF2609 0.59 +0.7
294,080 + GFF2609 0.77 -0.3
294,081 - GFF2609 0.77 -0.6
294,081 - GFF2609 0.77 +0.9
294,081 - GFF2609 0.77 +0.2
294,104 + GFF2609 0.80 +1.3
294,207 - +0.2
294,207 - +0.3
294,207 - -0.3
294,239 + +0.7
294,239 + +0.1
294,239 + +0.4
294,240 - -1.0
294,240 - +0.3
294,240 - +0.2
294,530 - GFF2610 0.53 -1.2
294,530 - GFF2610 0.53 +0.5
294,651 - -0.5
294,651 - -0.4
294,651 - -1.1
294,777 + -0.8
294,778 - -0.2
294,778 - -1.2
294,823 - GFF2611 0.13 +0.1
294,981 + GFF2611 0.27 -0.3
295,027 - GFF2611 0.31 +1.3
295,027 - GFF2611 0.31 +0.5
295,201 - GFF2611 0.46 -0.3
295,201 - GFF2611 0.46 +1.3
295,201 - GFF2611 0.46 -1.4
295,201 - GFF2611 0.46 +0.1
295,248 + GFF2611 0.50 -0.6

Or see this region's nucleotide sequence