Strain Fitness in Xanthobacter sp. DMC5 around GFF2601

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2600 and GFF2601 are separated by 174 nucleotidesGFF2601 and GFF2602 are separated by 90 nucleotides GFF2600 - hypothetical protein, at 284,891 to 286,087 GFF2600 GFF2601 - Nucleoid occlusion protein, at 286,262 to 288,325 GFF2601 GFF2602 - hypothetical protein, at 288,416 to 289,453 GFF2602 Position (kb) 286 287 288 289Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 285.273 kb on - strand, within GFF2600at 285.273 kb on - strand, within GFF2600at 285.273 kb on - strand, within GFF2600at 285.363 kb on - strand, within GFF2600at 285.374 kb on + strand, within GFF2600at 285.374 kb on + strand, within GFF2600at 285.374 kb on + strand, within GFF2600at 285.374 kb on + strand, within GFF2600at 285.375 kb on - strand, within GFF2600at 285.375 kb on - strand, within GFF2600at 285.375 kb on - strand, within GFF2600at 285.375 kb on - strand, within GFF2600at 285.375 kb on - strand, within GFF2600at 285.375 kb on - strand, within GFF2600at 285.476 kb on + strand, within GFF2600at 285.476 kb on + strand, within GFF2600at 285.518 kb on + strand, within GFF2600at 285.519 kb on - strand, within GFF2600at 285.519 kb on - strand, within GFF2600at 285.568 kb on + strand, within GFF2600at 285.623 kb on + strand, within GFF2600at 285.623 kb on + strand, within GFF2600at 285.623 kb on + strand, within GFF2600at 285.623 kb on + strand, within GFF2600at 285.623 kb on + strand, within GFF2600at 285.623 kb on + strand, within GFF2600at 285.624 kb on - strand, within GFF2600at 285.624 kb on - strand, within GFF2600at 285.624 kb on - strand, within GFF2600at 285.624 kb on - strand, within GFF2600at 285.675 kb on - strand, within GFF2600at 285.675 kb on - strand, within GFF2600at 285.675 kb on - strand, within GFF2600at 285.675 kb on - strand, within GFF2600at 285.705 kb on + strand, within GFF2600at 285.706 kb on - strand, within GFF2600at 286.466 kb on + strandat 286.466 kb on + strandat 286.466 kb on + strandat 286.466 kb on + strandat 286.467 kb on - strandat 286.467 kb on - strandat 286.467 kb on - strandat 286.467 kb on - strandat 286.467 kb on - strandat 286.467 kb on - strandat 286.534 kb on + strand, within GFF2601at 286.534 kb on + strand, within GFF2601at 286.534 kb on + strand, within GFF2601at 286.535 kb on - strand, within GFF2601at 286.535 kb on - strand, within GFF2601at 286.535 kb on - strand, within GFF2601at 286.769 kb on + strand, within GFF2601at 286.769 kb on + strand, within GFF2601at 286.770 kb on - strand, within GFF2601at 286.770 kb on - strand, within GFF2601at 286.868 kb on + strand, within GFF2601at 286.868 kb on + strand, within GFF2601at 286.868 kb on + strand, within GFF2601at 286.883 kb on + strand, within GFF2601at 286.883 kb on + strand, within GFF2601at 286.883 kb on + strand, within GFF2601at 286.884 kb on - strand, within GFF2601at 286.884 kb on - strand, within GFF2601at 286.884 kb on - strand, within GFF2601at 286.884 kb on - strand, within GFF2601at 286.884 kb on - strand, within GFF2601at 286.884 kb on - strand, within GFF2601at 287.133 kb on - strand, within GFF2601at 287.133 kb on - strand, within GFF2601at 287.133 kb on - strand, within GFF2601at 287.133 kb on - strand, within GFF2601at 287.144 kb on + strand, within GFF2601at 287.145 kb on - strand, within GFF2601at 287.145 kb on - strand, within GFF2601at 287.225 kb on + strand, within GFF2601at 287.225 kb on + strand, within GFF2601at 287.225 kb on + strand, within GFF2601at 287.225 kb on + strand, within GFF2601at 287.225 kb on + strand, within GFF2601at 287.225 kb on + strand, within GFF2601at 287.225 kb on + strand, within GFF2601at 287.226 kb on - strand, within GFF2601at 287.226 kb on - strand, within GFF2601at 287.226 kb on - strand, within GFF2601at 287.226 kb on - strand, within GFF2601at 287.226 kb on - strand, within GFF2601at 287.226 kb on - strand, within GFF2601at 287.226 kb on - strand, within GFF2601at 287.377 kb on + strand, within GFF2601at 287.378 kb on - strand, within GFF2601at 287.378 kb on - strand, within GFF2601at 287.480 kb on - strand, within GFF2601at 287.480 kb on - strand, within GFF2601at 287.693 kb on + strand, within GFF2601at 287.693 kb on + strand, within GFF2601at 287.693 kb on + strand, within GFF2601at 287.693 kb on + strand, within GFF2601at 287.693 kb on + strand, within GFF2601at 287.693 kb on + strand, within GFF2601at 287.693 kb on + strand, within GFF2601at 287.694 kb on - strand, within GFF2601at 287.694 kb on - strand, within GFF2601at 287.694 kb on - strand, within GFF2601at 287.694 kb on - strand, within GFF2601at 287.694 kb on - strand, within GFF2601at 287.694 kb on - strand, within GFF2601at 287.694 kb on - strand, within GFF2601at 287.694 kb on - strand, within GFF2601at 287.699 kb on + strand, within GFF2601at 287.699 kb on + strand, within GFF2601at 288.281 kb on - strandat 288.324 kb on - strandat 288.482 kb on + strandat 288.482 kb on + strandat 288.482 kb on + strandat 288.482 kb on + strandat 288.483 kb on - strandat 288.512 kb on + strandat 288.512 kb on + strandat 288.512 kb on + strandat 288.512 kb on + strandat 288.512 kb on + strandat 288.513 kb on - strandat 288.513 kb on - strandat 288.703 kb on + strand, within GFF2602at 288.832 kb on - strand, within GFF2602at 288.840 kb on - strand, within GFF2602at 288.840 kb on - strand, within GFF2602at 288.840 kb on - strand, within GFF2602at 288.905 kb on + strand, within GFF2602at 288.905 kb on + strand, within GFF2602at 288.905 kb on + strand, within GFF2602at 288.905 kb on + strand, within GFF2602at 288.906 kb on - strand, within GFF2602at 288.906 kb on - strand, within GFF2602at 288.906 kb on - strand, within GFF2602at 288.906 kb on - strand, within GFF2602at 288.906 kb on - strand, within GFF2602at 288.906 kb on - strand, within GFF2602at 288.906 kb on - strand, within GFF2602at 288.908 kb on + strand, within GFF2602at 288.909 kb on - strand, within GFF2602at 288.985 kb on + strand, within GFF2602at 289.042 kb on + strand, within GFF2602at 289.042 kb on + strand, within GFF2602at 289.042 kb on + strand, within GFF2602at 289.238 kb on + strand, within GFF2602at 289.238 kb on + strand, within GFF2602at 289.238 kb on + strand, within GFF2602at 289.238 kb on + strand, within GFF2602at 289.239 kb on - strand, within GFF2602at 289.239 kb on - strand, within GFF2602

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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285,273 - GFF2600 0.32 -0.3
285,273 - GFF2600 0.32 +0.5
285,273 - GFF2600 0.32 -0.7
285,363 - GFF2600 0.39 -0.5
285,374 + GFF2600 0.40 -0.0
285,374 + GFF2600 0.40 +0.3
285,374 + GFF2600 0.40 -0.6
285,374 + GFF2600 0.40 +0.5
285,375 - GFF2600 0.40 -0.0
285,375 - GFF2600 0.40 +0.8
285,375 - GFF2600 0.40 +2.1
285,375 - GFF2600 0.40 -0.3
285,375 - GFF2600 0.40 +0.8
285,375 - GFF2600 0.40 -0.8
285,476 + GFF2600 0.49 -0.6
285,476 + GFF2600 0.49 -0.1
285,518 + GFF2600 0.52 -0.3
285,519 - GFF2600 0.52 +0.6
285,519 - GFF2600 0.52 +0.1
285,568 + GFF2600 0.57 -0.4
285,623 + GFF2600 0.61 +1.7
285,623 + GFF2600 0.61 -0.1
285,623 + GFF2600 0.61 -0.7
285,623 + GFF2600 0.61 +0.3
285,623 + GFF2600 0.61 -0.9
285,623 + GFF2600 0.61 +0.4
285,624 - GFF2600 0.61 +0.0
285,624 - GFF2600 0.61 +0.1
285,624 - GFF2600 0.61 -0.8
285,624 - GFF2600 0.61 -0.2
285,675 - GFF2600 0.65 +0.1
285,675 - GFF2600 0.65 +0.4
285,675 - GFF2600 0.65 -0.8
285,675 - GFF2600 0.65 +0.7
285,705 + GFF2600 0.68 +0.9
285,706 - GFF2600 0.68 +0.3
286,466 + -0.0
286,466 + -0.1
286,466 + -0.7
286,466 + -1.1
286,467 - -1.0
286,467 - +0.7
286,467 - +0.5
286,467 - -0.6
286,467 - -0.2
286,467 - +0.7
286,534 + GFF2601 0.13 -0.0
286,534 + GFF2601 0.13 -0.2
286,534 + GFF2601 0.13 +0.6
286,535 - GFF2601 0.13 -0.3
286,535 - GFF2601 0.13 -0.5
286,535 - GFF2601 0.13 -0.3
286,769 + GFF2601 0.25 -0.4
286,769 + GFF2601 0.25 +1.3
286,770 - GFF2601 0.25 +0.9
286,770 - GFF2601 0.25 +0.0
286,868 + GFF2601 0.29 -1.7
286,868 + GFF2601 0.29 -0.2
286,868 + GFF2601 0.29 -0.3
286,883 + GFF2601 0.30 -1.1
286,883 + GFF2601 0.30 -0.4
286,883 + GFF2601 0.30 -0.2
286,884 - GFF2601 0.30 +0.1
286,884 - GFF2601 0.30 +0.5
286,884 - GFF2601 0.30 +0.3
286,884 - GFF2601 0.30 -0.4
286,884 - GFF2601 0.30 +0.7
286,884 - GFF2601 0.30 +1.1
287,133 - GFF2601 0.42 +1.3
287,133 - GFF2601 0.42 -0.0
287,133 - GFF2601 0.42 -1.5
287,133 - GFF2601 0.42 +0.4
287,144 + GFF2601 0.43 -0.6
287,145 - GFF2601 0.43 +0.9
287,145 - GFF2601 0.43 -0.7
287,225 + GFF2601 0.47 +0.8
287,225 + GFF2601 0.47 -0.5
287,225 + GFF2601 0.47 +0.2
287,225 + GFF2601 0.47 -0.4
287,225 + GFF2601 0.47 -1.4
287,225 + GFF2601 0.47 -0.3
287,225 + GFF2601 0.47 +1.3
287,226 - GFF2601 0.47 -1.0
287,226 - GFF2601 0.47 +0.8
287,226 - GFF2601 0.47 +1.6
287,226 - GFF2601 0.47 -0.1
287,226 - GFF2601 0.47 -1.1
287,226 - GFF2601 0.47 -0.1
287,226 - GFF2601 0.47 +2.0
287,377 + GFF2601 0.54 -1.1
287,378 - GFF2601 0.54 +0.7
287,378 - GFF2601 0.54 -0.3
287,480 - GFF2601 0.59 +1.2
287,480 - GFF2601 0.59 +0.3
287,693 + GFF2601 0.69 +0.1
287,693 + GFF2601 0.69 +0.1
287,693 + GFF2601 0.69 +0.6
287,693 + GFF2601 0.69 -2.9
287,693 + GFF2601 0.69 -0.2
287,693 + GFF2601 0.69 -0.9
287,693 + GFF2601 0.69 -0.7
287,694 - GFF2601 0.69 -1.2
287,694 - GFF2601 0.69 +0.7
287,694 - GFF2601 0.69 -1.1
287,694 - GFF2601 0.69 -0.9
287,694 - GFF2601 0.69 -0.4
287,694 - GFF2601 0.69 -0.3
287,694 - GFF2601 0.69 +0.2
287,694 - GFF2601 0.69 -0.9
287,699 + GFF2601 0.70 -0.0
287,699 + GFF2601 0.70 -0.4
288,281 - -1.2
288,324 - +0.6
288,482 + -0.3
288,482 + +0.5
288,482 + -0.3
288,482 + +0.5
288,483 - -0.5
288,512 + +0.6
288,512 + +1.3
288,512 + +0.6
288,512 + +0.8
288,512 + -0.1
288,513 - -0.7
288,513 - -0.1
288,703 + GFF2602 0.28 -0.9
288,832 - GFF2602 0.40 +2.0
288,840 - GFF2602 0.41 +0.5
288,840 - GFF2602 0.41 -1.2
288,840 - GFF2602 0.41 +0.5
288,905 + GFF2602 0.47 +1.6
288,905 + GFF2602 0.47 -0.1
288,905 + GFF2602 0.47 -0.2
288,905 + GFF2602 0.47 +0.5
288,906 - GFF2602 0.47 +0.5
288,906 - GFF2602 0.47 -0.2
288,906 - GFF2602 0.47 -0.6
288,906 - GFF2602 0.47 -0.2
288,906 - GFF2602 0.47 -0.1
288,906 - GFF2602 0.47 +0.4
288,906 - GFF2602 0.47 +0.9
288,908 + GFF2602 0.47 +1.6
288,909 - GFF2602 0.47 +0.7
288,985 + GFF2602 0.55 +1.2
289,042 + GFF2602 0.60 +0.6
289,042 + GFF2602 0.60 +0.4
289,042 + GFF2602 0.60 +0.2
289,238 + GFF2602 0.79 +0.4
289,238 + GFF2602 0.79 -0.6
289,238 + GFF2602 0.79 -1.4
289,238 + GFF2602 0.79 +0.4
289,239 - GFF2602 0.79 -0.7
289,239 - GFF2602 0.79 -1.1

Or see this region's nucleotide sequence