Strain Fitness in Xanthobacter sp. DMC5 around GFF2600

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2599 and GFF2600 are separated by 772 nucleotidesGFF2600 and GFF2601 are separated by 174 nucleotides GFF2599 - hypothetical protein, at 283,267 to 284,118 GFF2599 GFF2600 - hypothetical protein, at 284,891 to 286,087 GFF2600 GFF2601 - Nucleoid occlusion protein, at 286,262 to 288,325 GFF2601 Position (kb) 284 285 286 287Strain fitness (log2 ratio) -2 -1 0 1 2at 283.900 kb on + strand, within GFF2599at 283.900 kb on + strand, within GFF2599at 283.901 kb on - strand, within GFF2599at 283.901 kb on - strand, within GFF2599at 283.901 kb on - strand, within GFF2599at 283.935 kb on + strand, within GFF2599at 283.935 kb on + strand, within GFF2599at 283.935 kb on + strand, within GFF2599at 283.936 kb on - strand, within GFF2599at 283.936 kb on - strand, within GFF2599at 283.936 kb on - strand, within GFF2599at 283.939 kb on + strand, within GFF2599at 283.939 kb on + strand, within GFF2599at 283.940 kb on - strand, within GFF2599at 283.940 kb on - strand, within GFF2599at 283.940 kb on - strand, within GFF2599at 284.010 kb on + strand, within GFF2599at 284.011 kb on - strand, within GFF2599at 284.054 kb on - strandat 284.054 kb on - strandat 284.054 kb on - strandat 284.054 kb on - strandat 284.054 kb on - strandat 284.054 kb on - strandat 284.054 kb on - strandat 284.063 kb on + strandat 284.063 kb on + strandat 284.064 kb on - strandat 284.139 kb on + strandat 284.157 kb on + strandat 284.157 kb on + strandat 284.222 kb on + strandat 284.251 kb on + strandat 284.251 kb on + strandat 284.251 kb on + strandat 284.251 kb on + strandat 284.252 kb on - strandat 284.252 kb on - strandat 284.252 kb on - strandat 284.338 kb on + strandat 284.339 kb on - strandat 284.382 kb on + strandat 284.383 kb on - strandat 284.389 kb on + strandat 284.389 kb on + strandat 284.390 kb on - strandat 284.390 kb on - strandat 284.421 kb on + strandat 284.440 kb on + strandat 284.441 kb on - strandat 284.441 kb on - strandat 284.463 kb on + strandat 284.463 kb on + strandat 284.464 kb on - strandat 284.515 kb on + strandat 284.530 kb on + strandat 284.531 kb on - strandat 284.531 kb on - strandat 284.569 kb on - strandat 284.670 kb on + strandat 284.670 kb on + strandat 284.752 kb on + strandat 284.940 kb on - strandat 284.940 kb on - strandat 285.017 kb on + strand, within GFF2600at 285.017 kb on + strand, within GFF2600at 285.017 kb on + strand, within GFF2600at 285.018 kb on - strand, within GFF2600at 285.018 kb on - strand, within GFF2600at 285.018 kb on - strand, within GFF2600at 285.018 kb on - strand, within GFF2600at 285.018 kb on - strand, within GFF2600at 285.018 kb on - strand, within GFF2600at 285.018 kb on - strand, within GFF2600at 285.018 kb on - strand, within GFF2600at 285.018 kb on - strand, within GFF2600at 285.038 kb on + strand, within GFF2600at 285.038 kb on + strand, within GFF2600at 285.038 kb on + strand, within GFF2600at 285.227 kb on + strand, within GFF2600at 285.228 kb on - strand, within GFF2600at 285.273 kb on - strand, within GFF2600at 285.273 kb on - strand, within GFF2600at 285.273 kb on - strand, within GFF2600at 285.363 kb on - strand, within GFF2600at 285.374 kb on + strand, within GFF2600at 285.374 kb on + strand, within GFF2600at 285.374 kb on + strand, within GFF2600at 285.374 kb on + strand, within GFF2600at 285.375 kb on - strand, within GFF2600at 285.375 kb on - strand, within GFF2600at 285.375 kb on - strand, within GFF2600at 285.375 kb on - strand, within GFF2600at 285.375 kb on - strand, within GFF2600at 285.375 kb on - strand, within GFF2600at 285.476 kb on + strand, within GFF2600at 285.476 kb on + strand, within GFF2600at 285.518 kb on + strand, within GFF2600at 285.519 kb on - strand, within GFF2600at 285.519 kb on - strand, within GFF2600at 285.568 kb on + strand, within GFF2600at 285.623 kb on + strand, within GFF2600at 285.623 kb on + strand, within GFF2600at 285.623 kb on + strand, within GFF2600at 285.623 kb on + strand, within GFF2600at 285.623 kb on + strand, within GFF2600at 285.623 kb on + strand, within GFF2600at 285.624 kb on - strand, within GFF2600at 285.624 kb on - strand, within GFF2600at 285.624 kb on - strand, within GFF2600at 285.624 kb on - strand, within GFF2600at 285.675 kb on - strand, within GFF2600at 285.675 kb on - strand, within GFF2600at 285.675 kb on - strand, within GFF2600at 285.675 kb on - strand, within GFF2600at 285.705 kb on + strand, within GFF2600at 285.706 kb on - strand, within GFF2600at 286.466 kb on + strandat 286.466 kb on + strandat 286.466 kb on + strandat 286.466 kb on + strandat 286.467 kb on - strandat 286.467 kb on - strandat 286.467 kb on - strandat 286.467 kb on - strandat 286.467 kb on - strandat 286.467 kb on - strandat 286.534 kb on + strand, within GFF2601at 286.534 kb on + strand, within GFF2601at 286.534 kb on + strand, within GFF2601at 286.535 kb on - strand, within GFF2601at 286.535 kb on - strand, within GFF2601at 286.535 kb on - strand, within GFF2601at 286.769 kb on + strand, within GFF2601at 286.769 kb on + strand, within GFF2601at 286.770 kb on - strand, within GFF2601at 286.770 kb on - strand, within GFF2601at 286.868 kb on + strand, within GFF2601at 286.868 kb on + strand, within GFF2601at 286.868 kb on + strand, within GFF2601at 286.883 kb on + strand, within GFF2601at 286.883 kb on + strand, within GFF2601at 286.883 kb on + strand, within GFF2601at 286.884 kb on - strand, within GFF2601at 286.884 kb on - strand, within GFF2601at 286.884 kb on - strand, within GFF2601at 286.884 kb on - strand, within GFF2601at 286.884 kb on - strand, within GFF2601at 286.884 kb on - strand, within GFF2601

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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283,900 + GFF2599 0.74 +0.1
283,900 + GFF2599 0.74 -0.3
283,901 - GFF2599 0.74 +0.2
283,901 - GFF2599 0.74 +1.1
283,901 - GFF2599 0.74 -1.1
283,935 + GFF2599 0.78 -0.3
283,935 + GFF2599 0.78 -0.4
283,935 + GFF2599 0.78 -0.7
283,936 - GFF2599 0.79 +0.4
283,936 - GFF2599 0.79 +1.7
283,936 - GFF2599 0.79 +0.9
283,939 + GFF2599 0.79 -0.4
283,939 + GFF2599 0.79 +0.8
283,940 - GFF2599 0.79 -0.2
283,940 - GFF2599 0.79 -0.2
283,940 - GFF2599 0.79 +1.0
284,010 + GFF2599 0.87 +0.9
284,011 - GFF2599 0.87 -1.8
284,054 - +0.6
284,054 - -0.4
284,054 - -0.4
284,054 - -1.2
284,054 - +0.1
284,054 - -0.5
284,054 - +0.7
284,063 + -0.3
284,063 + +0.7
284,064 - +0.5
284,139 + -0.1
284,157 + +0.2
284,157 + -0.7
284,222 + -0.8
284,251 + -0.2
284,251 + -0.2
284,251 + -0.2
284,251 + +0.7
284,252 - +0.7
284,252 - -0.5
284,252 - +0.2
284,338 + -0.6
284,339 - +0.3
284,382 + -1.1
284,383 - -1.1
284,389 + +0.2
284,389 + +0.2
284,390 - +0.5
284,390 - +0.1
284,421 + -0.2
284,440 + -0.4
284,441 - -0.0
284,441 - -1.1
284,463 + -0.7
284,463 + +0.4
284,464 - +0.7
284,515 + -0.1
284,530 + -2.7
284,531 - +0.3
284,531 - -1.3
284,569 - -0.6
284,670 + +0.5
284,670 + +0.1
284,752 + -1.2
284,940 - +0.7
284,940 - -0.0
285,017 + GFF2600 0.11 -0.2
285,017 + GFF2600 0.11 -0.9
285,017 + GFF2600 0.11 -0.5
285,018 - GFF2600 0.11 -0.6
285,018 - GFF2600 0.11 -0.6
285,018 - GFF2600 0.11 +1.9
285,018 - GFF2600 0.11 -0.8
285,018 - GFF2600 0.11 -0.5
285,018 - GFF2600 0.11 +0.7
285,018 - GFF2600 0.11 -0.1
285,018 - GFF2600 0.11 -2.3
285,018 - GFF2600 0.11 -1.3
285,038 + GFF2600 0.12 -0.5
285,038 + GFF2600 0.12 +0.0
285,038 + GFF2600 0.12 -0.7
285,227 + GFF2600 0.28 +0.2
285,228 - GFF2600 0.28 +0.1
285,273 - GFF2600 0.32 -0.3
285,273 - GFF2600 0.32 +0.5
285,273 - GFF2600 0.32 -0.7
285,363 - GFF2600 0.39 -0.5
285,374 + GFF2600 0.40 -0.0
285,374 + GFF2600 0.40 +0.3
285,374 + GFF2600 0.40 -0.6
285,374 + GFF2600 0.40 +0.5
285,375 - GFF2600 0.40 -0.0
285,375 - GFF2600 0.40 +0.8
285,375 - GFF2600 0.40 +2.1
285,375 - GFF2600 0.40 -0.3
285,375 - GFF2600 0.40 +0.8
285,375 - GFF2600 0.40 -0.8
285,476 + GFF2600 0.49 -0.6
285,476 + GFF2600 0.49 -0.1
285,518 + GFF2600 0.52 -0.3
285,519 - GFF2600 0.52 +0.6
285,519 - GFF2600 0.52 +0.1
285,568 + GFF2600 0.57 -0.4
285,623 + GFF2600 0.61 +1.7
285,623 + GFF2600 0.61 -0.1
285,623 + GFF2600 0.61 -0.7
285,623 + GFF2600 0.61 +0.3
285,623 + GFF2600 0.61 -0.9
285,623 + GFF2600 0.61 +0.4
285,624 - GFF2600 0.61 +0.0
285,624 - GFF2600 0.61 +0.1
285,624 - GFF2600 0.61 -0.8
285,624 - GFF2600 0.61 -0.2
285,675 - GFF2600 0.65 +0.1
285,675 - GFF2600 0.65 +0.4
285,675 - GFF2600 0.65 -0.8
285,675 - GFF2600 0.65 +0.7
285,705 + GFF2600 0.68 +0.9
285,706 - GFF2600 0.68 +0.3
286,466 + -0.0
286,466 + -0.1
286,466 + -0.7
286,466 + -1.1
286,467 - -1.0
286,467 - +0.7
286,467 - +0.5
286,467 - -0.6
286,467 - -0.2
286,467 - +0.7
286,534 + GFF2601 0.13 -0.0
286,534 + GFF2601 0.13 -0.2
286,534 + GFF2601 0.13 +0.6
286,535 - GFF2601 0.13 -0.3
286,535 - GFF2601 0.13 -0.5
286,535 - GFF2601 0.13 -0.3
286,769 + GFF2601 0.25 -0.4
286,769 + GFF2601 0.25 +1.3
286,770 - GFF2601 0.25 +0.9
286,770 - GFF2601 0.25 +0.0
286,868 + GFF2601 0.29 -1.7
286,868 + GFF2601 0.29 -0.2
286,868 + GFF2601 0.29 -0.3
286,883 + GFF2601 0.30 -1.1
286,883 + GFF2601 0.30 -0.4
286,883 + GFF2601 0.30 -0.2
286,884 - GFF2601 0.30 +0.1
286,884 - GFF2601 0.30 +0.5
286,884 - GFF2601 0.30 +0.3
286,884 - GFF2601 0.30 -0.4
286,884 - GFF2601 0.30 +0.7
286,884 - GFF2601 0.30 +1.1

Or see this region's nucleotide sequence