Strain Fitness in Xanthobacter sp. DMC5 around GFF2594

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2592 and GFF2593 are separated by 92 nucleotidesGFF2593 and GFF2594 are separated by 56 nucleotides GFF2592 - High-affinity branched-chain amino acid transport system permease protein LivH, at 274,615 to 275,514 GFF2592 GFF2593 - hypothetical protein, at 275,607 to 275,987 GFF2593 GFF2594 - HTH-type transcriptional repressor NanR, at 276,044 to 276,862 GFF2594 Position (kb) 276 277Strain fitness (log2 ratio) -3 -2 -1 0 1at 275.088 kb on - strand, within GFF2592at 275.088 kb on - strand, within GFF2592at 275.088 kb on - strand, within GFF2592at 275.096 kb on + strand, within GFF2592at 275.096 kb on + strand, within GFF2592at 275.220 kb on + strand, within GFF2592at 275.220 kb on + strand, within GFF2592at 275.221 kb on - strand, within GFF2592at 275.237 kb on + strand, within GFF2592at 275.237 kb on + strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.238 kb on - strand, within GFF2592at 275.254 kb on + strand, within GFF2592at 275.255 kb on - strand, within GFF2592at 275.372 kb on + strand, within GFF2592at 275.372 kb on + strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.373 kb on - strand, within GFF2592at 275.471 kb on - strandat 275.471 kb on - strandat 275.474 kb on + strandat 275.475 kb on - strandat 275.525 kb on + strandat 275.526 kb on - strandat 275.627 kb on + strandat 275.627 kb on + strandat 275.627 kb on + strandat 275.627 kb on + strandat 275.627 kb on + strandat 275.628 kb on - strandat 275.628 kb on - strandat 275.628 kb on - strandat 275.665 kb on + strand, within GFF2593at 275.665 kb on + strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.666 kb on - strand, within GFF2593at 275.849 kb on + strand, within GFF2593at 275.849 kb on + strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.850 kb on - strand, within GFF2593at 275.858 kb on - strand, within GFF2593at 275.938 kb on + strand, within GFF2593at 276.157 kb on + strand, within GFF2594at 276.157 kb on + strand, within GFF2594at 276.157 kb on + strand, within GFF2594at 276.157 kb on + strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.158 kb on - strand, within GFF2594at 276.258 kb on + strand, within GFF2594at 276.259 kb on - strand, within GFF2594at 276.288 kb on + strand, within GFF2594at 276.293 kb on + strand, within GFF2594at 276.293 kb on + strand, within GFF2594at 276.445 kb on + strand, within GFF2594at 276.446 kb on - strand, within GFF2594at 276.534 kb on + strand, within GFF2594at 276.535 kb on - strand, within GFF2594at 276.535 kb on - strand, within GFF2594at 276.570 kb on + strand, within GFF2594at 276.570 kb on + strand, within GFF2594at 276.570 kb on + strand, within GFF2594at 276.650 kb on - strand, within GFF2594at 276.650 kb on - strand, within GFF2594at 276.862 kb on + strandat 276.863 kb on - strandat 276.863 kb on - strandat 276.863 kb on - strandat 276.863 kb on - strandat 276.875 kb on + strandat 276.875 kb on + strandat 276.929 kb on + strandat 276.934 kb on + strandat 276.934 kb on + strandat 276.934 kb on + strandat 276.934 kb on + strandat 276.935 kb on - strandat 276.935 kb on - strandat 276.956 kb on + strandat 276.956 kb on + strandat 276.956 kb on + strandat 276.956 kb on + strandat 276.957 kb on - strandat 276.982 kb on + strandat 276.982 kb on + strandat 276.982 kb on + strandat 277.011 kb on - strandat 277.011 kb on - strandat 277.119 kb on - strandat 277.181 kb on + strandat 277.181 kb on + strandat 277.181 kb on + strandat 277.182 kb on - strandat 277.182 kb on - strandat 277.182 kb on - strandat 277.200 kb on + strandat 277.217 kb on + strandat 277.217 kb on + strandat 277.217 kb on + strandat 277.217 kb on + strandat 277.218 kb on - strandat 277.218 kb on - strandat 277.218 kb on - strandat 277.306 kb on + strandat 277.306 kb on + strandat 277.306 kb on + strandat 277.306 kb on + strandat 277.307 kb on - strandat 277.307 kb on - strandat 277.307 kb on - strandat 277.327 kb on - strandat 277.327 kb on - strandat 277.340 kb on + strandat 277.471 kb on - strandat 277.574 kb on - strandat 277.574 kb on - strandat 277.679 kb on + strandat 277.688 kb on + strandat 277.688 kb on + strandat 277.689 kb on - strandat 277.689 kb on - strandat 277.689 kb on - strandat 277.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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275,088 - GFF2592 0.53 -0.0
275,088 - GFF2592 0.53 +0.3
275,088 - GFF2592 0.53 +0.1
275,096 + GFF2592 0.53 +0.1
275,096 + GFF2592 0.53 +0.9
275,220 + GFF2592 0.67 -0.0
275,220 + GFF2592 0.67 -0.1
275,221 - GFF2592 0.67 -0.8
275,237 + GFF2592 0.69 +0.6
275,237 + GFF2592 0.69 -0.1
275,238 - GFF2592 0.69 -0.3
275,238 - GFF2592 0.69 +0.2
275,238 - GFF2592 0.69 -1.0
275,238 - GFF2592 0.69 -0.9
275,238 - GFF2592 0.69 -0.1
275,254 + GFF2592 0.71 +0.3
275,255 - GFF2592 0.71 -0.3
275,372 + GFF2592 0.84 +1.5
275,372 + GFF2592 0.84 +0.1
275,373 - GFF2592 0.84 +1.6
275,373 - GFF2592 0.84 -1.2
275,373 - GFF2592 0.84 -0.5
275,373 - GFF2592 0.84 +0.1
275,471 - -0.6
275,471 - -0.7
275,474 + +0.0
275,475 - +0.3
275,525 + +0.9
275,526 - +1.2
275,627 + +1.1
275,627 + -0.0
275,627 + -0.7
275,627 + -1.6
275,627 + -0.3
275,628 - +1.0
275,628 - +0.5
275,628 - -2.3
275,665 + GFF2593 0.15 -1.0
275,665 + GFF2593 0.15 +0.1
275,666 - GFF2593 0.15 -0.6
275,666 - GFF2593 0.15 -0.9
275,666 - GFF2593 0.15 +0.9
275,666 - GFF2593 0.15 -0.5
275,666 - GFF2593 0.15 +0.1
275,666 - GFF2593 0.15 -1.7
275,666 - GFF2593 0.15 -0.1
275,666 - GFF2593 0.15 +0.7
275,849 + GFF2593 0.64 -1.3
275,849 + GFF2593 0.64 -1.0
275,850 - GFF2593 0.64 -0.6
275,850 - GFF2593 0.64 -0.2
275,850 - GFF2593 0.64 +0.9
275,850 - GFF2593 0.64 +0.7
275,850 - GFF2593 0.64 -0.9
275,850 - GFF2593 0.64 +0.2
275,858 - GFF2593 0.66 +0.6
275,938 + GFF2593 0.87 +0.3
276,157 + GFF2594 0.14 -1.9
276,157 + GFF2594 0.14 -0.7
276,157 + GFF2594 0.14 -1.2
276,157 + GFF2594 0.14 +1.3
276,158 - GFF2594 0.14 -0.0
276,158 - GFF2594 0.14 -0.6
276,158 - GFF2594 0.14 -0.9
276,158 - GFF2594 0.14 -0.9
276,158 - GFF2594 0.14 +1.6
276,258 + GFF2594 0.26 -0.5
276,259 - GFF2594 0.26 -1.2
276,288 + GFF2594 0.30 +0.1
276,293 + GFF2594 0.30 -0.7
276,293 + GFF2594 0.30 +0.3
276,445 + GFF2594 0.49 -0.4
276,446 - GFF2594 0.49 -0.8
276,534 + GFF2594 0.60 -0.4
276,535 - GFF2594 0.60 +0.7
276,535 - GFF2594 0.60 -1.7
276,570 + GFF2594 0.64 +1.3
276,570 + GFF2594 0.64 -0.1
276,570 + GFF2594 0.64 -0.0
276,650 - GFF2594 0.74 -2.1
276,650 - GFF2594 0.74 +0.8
276,862 + -0.5
276,863 - -0.1
276,863 - -0.3
276,863 - +0.8
276,863 - -0.1
276,875 + -0.5
276,875 + +0.5
276,929 + +0.1
276,934 + -0.4
276,934 + -1.3
276,934 + -1.0
276,934 + -0.9
276,935 - +0.6
276,935 - -0.9
276,956 + +0.2
276,956 + -0.0
276,956 + +0.2
276,956 + +0.6
276,957 - +0.7
276,982 + +1.2
276,982 + -1.5
276,982 + -0.0
277,011 - +0.9
277,011 - -0.4
277,119 - +0.5
277,181 + +0.2
277,181 + -0.0
277,181 + -0.2
277,182 - +1.0
277,182 - -0.6
277,182 - -0.8
277,200 + -1.2
277,217 + +0.5
277,217 + -1.2
277,217 + +0.4
277,217 + -3.0
277,218 - -0.2
277,218 - +1.5
277,218 - -0.9
277,306 + -2.4
277,306 + -0.9
277,306 + +0.8
277,306 + +0.6
277,307 - -0.3
277,307 - -1.3
277,307 - -0.6
277,327 - -1.1
277,327 - +1.0
277,340 + -0.4
277,471 - -0.7
277,574 - -0.6
277,574 - -1.2
277,679 + +0.2
277,688 + +0.6
277,688 + +0.8
277,689 - -0.0
277,689 - -0.3
277,689 - -0.5
277,689 - -1.3

Or see this region's nucleotide sequence