Strain Fitness in Xanthobacter sp. DMC5 around GFF259

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF258 and GFF259 are separated by 31 nucleotidesGFF259 and GFF260 are separated by 172 nucleotides GFF258 - tRNA dimethylallyltransferase, at 272,854 to 273,759 GFF258 GFF259 - hypothetical protein, at 273,791 to 274,690 GFF259 GFF260 - hypothetical protein, at 274,863 to 276,071 GFF260 Position (kb) 273 274 275Strain fitness (log2 ratio) -2 -1 0 1at 272.937 kb on - strandat 273.458 kb on + strand, within GFF258at 273.458 kb on + strand, within GFF258at 273.487 kb on + strand, within GFF258at 273.554 kb on + strand, within GFF258at 273.581 kb on + strand, within GFF258at 273.651 kb on - strand, within GFF258at 274.712 kb on - strandat 274.864 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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272,937 - -0.2
273,458 + GFF258 0.67 -2.2
273,458 + GFF258 0.67 -0.4
273,487 + GFF258 0.70 -0.2
273,554 + GFF258 0.77 -0.2
273,581 + GFF258 0.80 +1.0
273,651 - GFF258 0.88 +0.6
274,712 - +1.2
274,864 + -0.2

Or see this region's nucleotide sequence