Strain Fitness in Xanthobacter sp. DMC5 around GFF2587

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2585 and GFF2586 are separated by 18 nucleotidesGFF2586 and GFF2587 are separated by 10 nucleotidesGFF2587 and GFF2588 are separated by 176 nucleotides GFF2585 - Acylamidase, at 267,443 to 268,873 GFF2585 GFF2586 - hypothetical protein, at 268,892 to 269,446 GFF2586 GFF2587 - Acylamidase, at 269,457 to 270,776 GFF2587 GFF2588 - Aliphatic amidase expression-regulating protein, at 270,953 to 272,143 GFF2588 Position (kb) 269 270 271Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 268.472 kb on + strand, within GFF2585at 268.571 kb on + strand, within GFF2585at 268.571 kb on + strand, within GFF2585at 268.572 kb on - strand, within GFF2585at 268.717 kb on - strand, within GFF2585at 269.050 kb on + strand, within GFF2586at 269.051 kb on - strand, within GFF2586at 269.051 kb on - strand, within GFF2586at 269.203 kb on - strand, within GFF2586at 269.203 kb on - strand, within GFF2586at 269.286 kb on + strand, within GFF2586at 269.286 kb on + strand, within GFF2586at 269.286 kb on + strand, within GFF2586at 269.286 kb on + strand, within GFF2586at 269.287 kb on - strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.311 kb on - strand, within GFF2586at 269.311 kb on - strand, within GFF2586at 269.458 kb on + strandat 269.459 kb on - strandat 269.503 kb on + strandat 269.523 kb on + strandat 269.523 kb on + strandat 269.523 kb on + strandat 269.524 kb on - strandat 269.524 kb on - strandat 269.725 kb on + strand, within GFF2587at 269.725 kb on + strand, within GFF2587at 269.726 kb on - strand, within GFF2587at 269.726 kb on - strand, within GFF2587at 269.726 kb on - strand, within GFF2587at 269.726 kb on - strand, within GFF2587at 269.747 kb on + strand, within GFF2587at 269.748 kb on - strand, within GFF2587at 269.748 kb on - strand, within GFF2587at 269.748 kb on - strand, within GFF2587at 269.814 kb on + strand, within GFF2587at 269.814 kb on + strand, within GFF2587at 269.814 kb on + strand, within GFF2587at 269.814 kb on + strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.932 kb on + strand, within GFF2587at 269.932 kb on + strand, within GFF2587at 269.932 kb on + strand, within GFF2587at 269.932 kb on + strand, within GFF2587at 269.933 kb on - strand, within GFF2587at 269.933 kb on - strand, within GFF2587at 269.933 kb on - strand, within GFF2587at 270.080 kb on + strand, within GFF2587at 270.080 kb on + strand, within GFF2587at 270.081 kb on - strand, within GFF2587at 270.081 kb on - strand, within GFF2587at 270.103 kb on + strand, within GFF2587at 270.104 kb on - strand, within GFF2587at 270.470 kb on + strand, within GFF2587at 270.470 kb on + strand, within GFF2587at 270.471 kb on - strand, within GFF2587at 270.471 kb on - strand, within GFF2587at 270.471 kb on - strand, within GFF2587at 270.471 kb on - strand, within GFF2587at 270.471 kb on - strand, within GFF2587at 270.542 kb on + strand, within GFF2587at 270.542 kb on + strand, within GFF2587at 270.542 kb on + strand, within GFF2587at 270.543 kb on - strand, within GFF2587at 270.799 kb on + strandat 270.799 kb on + strandat 270.800 kb on - strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.832 kb on + strandat 270.833 kb on - strandat 270.833 kb on - strandat 270.880 kb on - strandat 270.954 kb on + strandat 270.954 kb on + strandat 270.954 kb on + strandat 270.955 kb on - strandat 270.955 kb on - strandat 271.073 kb on + strand, within GFF2588at 271.073 kb on + strand, within GFF2588at 271.074 kb on - strand, within GFF2588at 271.074 kb on - strand, within GFF2588at 271.074 kb on - strand, within GFF2588at 271.074 kb on - strand, within GFF2588at 271.074 kb on - strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.185 kb on + strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.186 kb on - strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.263 kb on + strand, within GFF2588at 271.264 kb on - strand, within GFF2588at 271.264 kb on - strand, within GFF2588at 271.264 kb on - strand, within GFF2588at 271.311 kb on + strand, within GFF2588at 271.312 kb on - strand, within GFF2588at 271.312 kb on - strand, within GFF2588at 271.312 kb on - strand, within GFF2588at 271.416 kb on + strand, within GFF2588at 271.416 kb on + strand, within GFF2588at 271.416 kb on + strand, within GFF2588at 271.417 kb on - strand, within GFF2588at 271.530 kb on + strand, within GFF2588at 271.530 kb on + strand, within GFF2588at 271.530 kb on + strand, within GFF2588at 271.530 kb on + strand, within GFF2588at 271.531 kb on - strand, within GFF2588at 271.531 kb on - strand, within GFF2588at 271.565 kb on + strand, within GFF2588at 271.635 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.746 kb on + strand, within GFF2588at 271.747 kb on - strand, within GFF2588at 271.747 kb on - strand, within GFF2588

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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268,472 + GFF2585 0.72 +1.3
268,571 + GFF2585 0.79 +0.2
268,571 + GFF2585 0.79 +0.6
268,572 - GFF2585 0.79 -0.4
268,717 - GFF2585 0.89 -1.6
269,050 + GFF2586 0.28 +1.6
269,051 - GFF2586 0.29 -1.4
269,051 - GFF2586 0.29 +0.7
269,203 - GFF2586 0.56 -0.2
269,203 - GFF2586 0.56 +0.6
269,286 + GFF2586 0.71 +0.8
269,286 + GFF2586 0.71 +0.2
269,286 + GFF2586 0.71 -1.1
269,286 + GFF2586 0.71 +0.4
269,287 - GFF2586 0.71 -0.3
269,288 + GFF2586 0.71 -1.1
269,288 + GFF2586 0.71 -0.1
269,288 + GFF2586 0.71 +0.6
269,288 + GFF2586 0.71 -0.3
269,288 + GFF2586 0.71 -2.0
269,288 + GFF2586 0.71 -0.4
269,288 + GFF2586 0.71 -0.9
269,288 + GFF2586 0.71 -1.0
269,288 + GFF2586 0.71 +0.6
269,289 - GFF2586 0.72 -0.8
269,289 - GFF2586 0.72 +0.8
269,289 - GFF2586 0.72 +0.0
269,289 - GFF2586 0.72 -1.4
269,289 - GFF2586 0.72 -0.3
269,289 - GFF2586 0.72 +0.4
269,289 - GFF2586 0.72 +1.2
269,289 - GFF2586 0.72 +0.4
269,310 + GFF2586 0.75 -0.9
269,310 + GFF2586 0.75 +0.6
269,310 + GFF2586 0.75 -0.3
269,310 + GFF2586 0.75 -0.5
269,310 + GFF2586 0.75 -0.3
269,310 + GFF2586 0.75 +0.2
269,310 + GFF2586 0.75 +0.6
269,310 + GFF2586 0.75 +0.8
269,311 - GFF2586 0.75 -0.5
269,311 - GFF2586 0.75 -1.0
269,458 + +0.1
269,459 - +0.3
269,503 + +1.3
269,523 + -0.3
269,523 + +0.1
269,523 + -0.0
269,524 - +1.1
269,524 - +0.8
269,725 + GFF2587 0.20 -0.0
269,725 + GFF2587 0.20 -0.0
269,726 - GFF2587 0.20 +1.0
269,726 - GFF2587 0.20 -0.6
269,726 - GFF2587 0.20 +0.3
269,726 - GFF2587 0.20 -1.9
269,747 + GFF2587 0.22 +0.3
269,748 - GFF2587 0.22 +0.2
269,748 - GFF2587 0.22 +0.4
269,748 - GFF2587 0.22 -0.1
269,814 + GFF2587 0.27 -0.3
269,814 + GFF2587 0.27 -0.0
269,814 + GFF2587 0.27 +0.4
269,814 + GFF2587 0.27 -0.7
269,815 - GFF2587 0.27 -0.1
269,815 - GFF2587 0.27 -0.0
269,815 - GFF2587 0.27 -0.3
269,815 - GFF2587 0.27 -0.2
269,815 - GFF2587 0.27 -0.7
269,815 - GFF2587 0.27 -0.7
269,815 - GFF2587 0.27 -0.4
269,815 - GFF2587 0.27 -0.2
269,815 - GFF2587 0.27 -1.1
269,932 + GFF2587 0.36 +0.6
269,932 + GFF2587 0.36 -0.4
269,932 + GFF2587 0.36 -0.4
269,932 + GFF2587 0.36 +1.5
269,933 - GFF2587 0.36 +1.5
269,933 - GFF2587 0.36 +1.8
269,933 - GFF2587 0.36 -0.1
270,080 + GFF2587 0.47 -0.0
270,080 + GFF2587 0.47 -0.7
270,081 - GFF2587 0.47 -0.3
270,081 - GFF2587 0.47 +1.4
270,103 + GFF2587 0.49 -0.1
270,104 - GFF2587 0.49 -1.3
270,470 + GFF2587 0.77 -0.3
270,470 + GFF2587 0.77 +1.1
270,471 - GFF2587 0.77 +0.5
270,471 - GFF2587 0.77 -1.1
270,471 - GFF2587 0.77 +1.7
270,471 - GFF2587 0.77 +0.1
270,471 - GFF2587 0.77 +0.1
270,542 + GFF2587 0.82 +0.5
270,542 + GFF2587 0.82 +0.3
270,542 + GFF2587 0.82 -0.4
270,543 - GFF2587 0.82 -0.6
270,799 + -0.8
270,799 + -0.9
270,800 - +1.5
270,832 + +1.0
270,832 + -0.2
270,832 + +1.1
270,832 + +0.4
270,832 + +1.3
270,832 + +1.0
270,833 - -1.0
270,833 - +0.2
270,880 - +0.2
270,954 + +0.2
270,954 + -2.1
270,954 + -0.9
270,955 - -0.4
270,955 - -0.8
271,073 + GFF2588 0.10 +0.3
271,073 + GFF2588 0.10 +0.9
271,074 - GFF2588 0.10 +0.4
271,074 - GFF2588 0.10 +1.3
271,074 - GFF2588 0.10 -2.1
271,074 - GFF2588 0.10 -0.1
271,074 - GFF2588 0.10 -1.0
271,185 + GFF2588 0.19 -0.2
271,185 + GFF2588 0.19 -0.0
271,185 + GFF2588 0.19 -1.4
271,185 + GFF2588 0.19 +0.7
271,185 + GFF2588 0.19 -0.2
271,185 + GFF2588 0.19 -0.0
271,185 + GFF2588 0.19 -0.2
271,185 + GFF2588 0.19 -0.9
271,185 + GFF2588 0.19 -3.1
271,185 + GFF2588 0.19 -1.9
271,185 + GFF2588 0.19 -0.1
271,185 + GFF2588 0.19 +0.9
271,186 - GFF2588 0.20 +0.4
271,186 - GFF2588 0.20 -1.0
271,186 - GFF2588 0.20 -1.5
271,186 - GFF2588 0.20 -2.3
271,186 - GFF2588 0.20 -0.2
271,186 - GFF2588 0.20 -3.2
271,186 - GFF2588 0.20 +0.8
271,186 - GFF2588 0.20 -0.1
271,186 - GFF2588 0.20 -0.1
271,186 - GFF2588 0.20 -0.6
271,186 - GFF2588 0.20 +0.3
271,186 - GFF2588 0.20 +0.5
271,263 + GFF2588 0.26 -0.4
271,263 + GFF2588 0.26 +0.3
271,263 + GFF2588 0.26 -0.3
271,263 + GFF2588 0.26 -1.0
271,263 + GFF2588 0.26 +0.1
271,264 - GFF2588 0.26 -0.2
271,264 - GFF2588 0.26 -0.5
271,264 - GFF2588 0.26 -0.1
271,311 + GFF2588 0.30 -2.0
271,312 - GFF2588 0.30 +0.5
271,312 - GFF2588 0.30 -0.6
271,312 - GFF2588 0.30 -0.2
271,416 + GFF2588 0.39 -0.3
271,416 + GFF2588 0.39 +0.5
271,416 + GFF2588 0.39 -0.2
271,417 - GFF2588 0.39 -0.4
271,530 + GFF2588 0.48 +0.3
271,530 + GFF2588 0.48 +0.3
271,530 + GFF2588 0.48 -0.3
271,530 + GFF2588 0.48 +0.9
271,531 - GFF2588 0.49 +0.2
271,531 - GFF2588 0.49 +0.6
271,565 + GFF2588 0.51 +0.2
271,635 + GFF2588 0.57 -1.8
271,746 + GFF2588 0.67 +0.8
271,746 + GFF2588 0.67 +0.4
271,746 + GFF2588 0.67 -0.2
271,746 + GFF2588 0.67 -0.8
271,746 + GFF2588 0.67 -0.2
271,746 + GFF2588 0.67 -1.3
271,747 - GFF2588 0.67 +0.5
271,747 - GFF2588 0.67 -0.8

Or see this region's nucleotide sequence