Strain Fitness in Xanthobacter sp. DMC5 around GFF2585

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2584 and GFF2585 are separated by 126 nucleotidesGFF2585 and GFF2586 are separated by 18 nucleotidesGFF2586 and GFF2587 are separated by 10 nucleotides GFF2584 - hypothetical protein, at 266,246 to 267,316 GFF2584 GFF2585 - Acylamidase, at 267,443 to 268,873 GFF2585 GFF2586 - hypothetical protein, at 268,892 to 269,446 GFF2586 GFF2587 - Acylamidase, at 269,457 to 270,776 GFF2587 Position (kb) 267 268 269Strain fitness (log2 ratio) -2 -1 0 1at 266.484 kb on + strand, within GFF2584at 266.484 kb on + strand, within GFF2584at 266.484 kb on + strand, within GFF2584at 266.485 kb on - strand, within GFF2584at 266.485 kb on - strand, within GFF2584at 266.485 kb on - strand, within GFF2584at 266.487 kb on + strand, within GFF2584at 266.488 kb on - strand, within GFF2584at 266.488 kb on - strand, within GFF2584at 266.526 kb on - strand, within GFF2584at 266.552 kb on - strand, within GFF2584at 266.565 kb on + strand, within GFF2584at 266.566 kb on - strand, within GFF2584at 266.566 kb on - strand, within GFF2584at 266.637 kb on + strand, within GFF2584at 266.638 kb on - strand, within GFF2584at 266.638 kb on - strand, within GFF2584at 266.638 kb on - strand, within GFF2584at 266.676 kb on + strand, within GFF2584at 266.677 kb on - strand, within GFF2584at 266.677 kb on - strand, within GFF2584at 266.680 kb on + strand, within GFF2584at 266.681 kb on - strand, within GFF2584at 266.681 kb on - strand, within GFF2584at 266.681 kb on - strand, within GFF2584at 266.681 kb on - strand, within GFF2584at 266.681 kb on - strand, within GFF2584at 266.681 kb on - strand, within GFF2584at 266.722 kb on + strand, within GFF2584at 266.757 kb on + strand, within GFF2584at 266.757 kb on + strand, within GFF2584at 266.775 kb on + strand, within GFF2584at 266.776 kb on - strand, within GFF2584at 266.842 kb on + strand, within GFF2584at 266.872 kb on - strand, within GFF2584at 266.872 kb on - strand, within GFF2584at 266.957 kb on + strand, within GFF2584at 266.968 kb on - strand, within GFF2584at 266.991 kb on + strand, within GFF2584at 266.991 kb on + strand, within GFF2584at 266.992 kb on - strand, within GFF2584at 267.002 kb on + strand, within GFF2584at 267.002 kb on + strand, within GFF2584at 267.111 kb on + strand, within GFF2584at 267.111 kb on + strand, within GFF2584at 267.112 kb on - strand, within GFF2584at 267.112 kb on - strand, within GFF2584at 267.112 kb on - strand, within GFF2584at 267.112 kb on - strand, within GFF2584at 267.112 kb on - strand, within GFF2584at 267.114 kb on + strand, within GFF2584at 267.115 kb on - strand, within GFF2584at 267.135 kb on + strand, within GFF2584at 267.135 kb on + strand, within GFF2584at 267.136 kb on - strand, within GFF2584at 267.179 kb on - strand, within GFF2584at 267.179 kb on - strand, within GFF2584at 267.193 kb on - strand, within GFF2584at 267.308 kb on + strandat 267.308 kb on + strandat 267.308 kb on + strandat 267.308 kb on + strandat 267.308 kb on + strandat 267.309 kb on - strandat 267.309 kb on - strandat 267.309 kb on - strandat 267.480 kb on + strandat 267.480 kb on + strandat 267.480 kb on + strandat 267.480 kb on + strandat 267.481 kb on - strandat 267.481 kb on - strandat 267.481 kb on - strandat 267.481 kb on - strandat 267.808 kb on - strand, within GFF2585at 268.044 kb on + strand, within GFF2585at 268.090 kb on + strand, within GFF2585at 268.090 kb on + strand, within GFF2585at 268.135 kb on + strand, within GFF2585at 268.136 kb on - strand, within GFF2585at 268.164 kb on - strand, within GFF2585at 268.200 kb on - strand, within GFF2585at 268.200 kb on - strand, within GFF2585at 268.262 kb on + strand, within GFF2585at 268.290 kb on + strand, within GFF2585at 268.291 kb on - strand, within GFF2585at 268.291 kb on - strand, within GFF2585at 268.291 kb on - strand, within GFF2585at 268.472 kb on + strand, within GFF2585at 268.571 kb on + strand, within GFF2585at 268.571 kb on + strand, within GFF2585at 268.572 kb on - strand, within GFF2585at 268.717 kb on - strand, within GFF2585at 269.050 kb on + strand, within GFF2586at 269.051 kb on - strand, within GFF2586at 269.051 kb on - strand, within GFF2586at 269.203 kb on - strand, within GFF2586at 269.203 kb on - strand, within GFF2586at 269.286 kb on + strand, within GFF2586at 269.286 kb on + strand, within GFF2586at 269.286 kb on + strand, within GFF2586at 269.286 kb on + strand, within GFF2586at 269.287 kb on - strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.288 kb on + strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.289 kb on - strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.310 kb on + strand, within GFF2586at 269.311 kb on - strand, within GFF2586at 269.311 kb on - strand, within GFF2586at 269.458 kb on + strandat 269.459 kb on - strandat 269.503 kb on + strandat 269.523 kb on + strandat 269.523 kb on + strandat 269.523 kb on + strandat 269.524 kb on - strandat 269.524 kb on - strandat 269.725 kb on + strand, within GFF2587at 269.725 kb on + strand, within GFF2587at 269.726 kb on - strand, within GFF2587at 269.726 kb on - strand, within GFF2587at 269.726 kb on - strand, within GFF2587at 269.726 kb on - strand, within GFF2587at 269.747 kb on + strand, within GFF2587at 269.748 kb on - strand, within GFF2587at 269.748 kb on - strand, within GFF2587at 269.748 kb on - strand, within GFF2587at 269.814 kb on + strand, within GFF2587at 269.814 kb on + strand, within GFF2587at 269.814 kb on + strand, within GFF2587at 269.814 kb on + strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587at 269.815 kb on - strand, within GFF2587

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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266,484 + GFF2584 0.22 -1.1
266,484 + GFF2584 0.22 -0.3
266,484 + GFF2584 0.22 -0.2
266,485 - GFF2584 0.22 -0.5
266,485 - GFF2584 0.22 +0.3
266,485 - GFF2584 0.22 +1.3
266,487 + GFF2584 0.23 -0.4
266,488 - GFF2584 0.23 +0.0
266,488 - GFF2584 0.23 -0.8
266,526 - GFF2584 0.26 -1.1
266,552 - GFF2584 0.29 +0.1
266,565 + GFF2584 0.30 +0.8
266,566 - GFF2584 0.30 +0.1
266,566 - GFF2584 0.30 +0.9
266,637 + GFF2584 0.37 -0.7
266,638 - GFF2584 0.37 -0.0
266,638 - GFF2584 0.37 -0.0
266,638 - GFF2584 0.37 -0.3
266,676 + GFF2584 0.40 +0.7
266,677 - GFF2584 0.40 -1.6
266,677 - GFF2584 0.40 +0.3
266,680 + GFF2584 0.41 -0.2
266,681 - GFF2584 0.41 -1.4
266,681 - GFF2584 0.41 +1.0
266,681 - GFF2584 0.41 -0.2
266,681 - GFF2584 0.41 +0.6
266,681 - GFF2584 0.41 +1.2
266,681 - GFF2584 0.41 +0.8
266,722 + GFF2584 0.44 -0.0
266,757 + GFF2584 0.48 +0.4
266,757 + GFF2584 0.48 -0.5
266,775 + GFF2584 0.49 -0.4
266,776 - GFF2584 0.49 -1.0
266,842 + GFF2584 0.56 -0.2
266,872 - GFF2584 0.58 +0.5
266,872 - GFF2584 0.58 +0.2
266,957 + GFF2584 0.66 +0.3
266,968 - GFF2584 0.67 -0.1
266,991 + GFF2584 0.70 -1.6
266,991 + GFF2584 0.70 +0.0
266,992 - GFF2584 0.70 -0.3
267,002 + GFF2584 0.71 -1.6
267,002 + GFF2584 0.71 -1.5
267,111 + GFF2584 0.81 +0.2
267,111 + GFF2584 0.81 +0.6
267,112 - GFF2584 0.81 +0.2
267,112 - GFF2584 0.81 +0.0
267,112 - GFF2584 0.81 -0.0
267,112 - GFF2584 0.81 +0.8
267,112 - GFF2584 0.81 +0.5
267,114 + GFF2584 0.81 -0.2
267,115 - GFF2584 0.81 +1.6
267,135 + GFF2584 0.83 +0.1
267,135 + GFF2584 0.83 -0.9
267,136 - GFF2584 0.83 -0.2
267,179 - GFF2584 0.87 +0.1
267,179 - GFF2584 0.87 +0.6
267,193 - GFF2584 0.88 +0.3
267,308 + +0.0
267,308 + +0.9
267,308 + +0.7
267,308 + -0.9
267,308 + +0.2
267,309 - +0.7
267,309 - -0.0
267,309 - -0.2
267,480 + +0.3
267,480 + +1.0
267,480 + +0.2
267,480 + -1.5
267,481 - -0.5
267,481 - -0.4
267,481 - +0.3
267,481 - -0.8
267,808 - GFF2585 0.26 -0.0
268,044 + GFF2585 0.42 +1.3
268,090 + GFF2585 0.45 +0.4
268,090 + GFF2585 0.45 -0.2
268,135 + GFF2585 0.48 -0.9
268,136 - GFF2585 0.48 +1.0
268,164 - GFF2585 0.50 +0.4
268,200 - GFF2585 0.53 -0.4
268,200 - GFF2585 0.53 +0.8
268,262 + GFF2585 0.57 -0.4
268,290 + GFF2585 0.59 +0.7
268,291 - GFF2585 0.59 +0.9
268,291 - GFF2585 0.59 +0.3
268,291 - GFF2585 0.59 -0.2
268,472 + GFF2585 0.72 +1.3
268,571 + GFF2585 0.79 +0.2
268,571 + GFF2585 0.79 +0.6
268,572 - GFF2585 0.79 -0.4
268,717 - GFF2585 0.89 -1.6
269,050 + GFF2586 0.28 +1.6
269,051 - GFF2586 0.29 -1.4
269,051 - GFF2586 0.29 +0.7
269,203 - GFF2586 0.56 -0.2
269,203 - GFF2586 0.56 +0.6
269,286 + GFF2586 0.71 +0.8
269,286 + GFF2586 0.71 +0.2
269,286 + GFF2586 0.71 -1.1
269,286 + GFF2586 0.71 +0.4
269,287 - GFF2586 0.71 -0.3
269,288 + GFF2586 0.71 -1.1
269,288 + GFF2586 0.71 -0.1
269,288 + GFF2586 0.71 +0.6
269,288 + GFF2586 0.71 -0.3
269,288 + GFF2586 0.71 -2.0
269,288 + GFF2586 0.71 -0.4
269,288 + GFF2586 0.71 -0.9
269,288 + GFF2586 0.71 -1.0
269,288 + GFF2586 0.71 +0.6
269,289 - GFF2586 0.72 -0.8
269,289 - GFF2586 0.72 +0.8
269,289 - GFF2586 0.72 +0.0
269,289 - GFF2586 0.72 -1.4
269,289 - GFF2586 0.72 -0.3
269,289 - GFF2586 0.72 +0.4
269,289 - GFF2586 0.72 +1.2
269,289 - GFF2586 0.72 +0.4
269,310 + GFF2586 0.75 -0.9
269,310 + GFF2586 0.75 +0.6
269,310 + GFF2586 0.75 -0.3
269,310 + GFF2586 0.75 -0.5
269,310 + GFF2586 0.75 -0.3
269,310 + GFF2586 0.75 +0.2
269,310 + GFF2586 0.75 +0.6
269,310 + GFF2586 0.75 +0.8
269,311 - GFF2586 0.75 -0.5
269,311 - GFF2586 0.75 -1.0
269,458 + +0.1
269,459 - +0.3
269,503 + +1.3
269,523 + -0.3
269,523 + +0.1
269,523 + -0.0
269,524 - +1.1
269,524 - +0.8
269,725 + GFF2587 0.20 -0.0
269,725 + GFF2587 0.20 -0.0
269,726 - GFF2587 0.20 +1.0
269,726 - GFF2587 0.20 -0.6
269,726 - GFF2587 0.20 +0.3
269,726 - GFF2587 0.20 -1.9
269,747 + GFF2587 0.22 +0.3
269,748 - GFF2587 0.22 +0.2
269,748 - GFF2587 0.22 +0.4
269,748 - GFF2587 0.22 -0.1
269,814 + GFF2587 0.27 -0.3
269,814 + GFF2587 0.27 -0.0
269,814 + GFF2587 0.27 +0.4
269,814 + GFF2587 0.27 -0.7
269,815 - GFF2587 0.27 -0.1
269,815 - GFF2587 0.27 -0.0
269,815 - GFF2587 0.27 -0.3
269,815 - GFF2587 0.27 -0.2
269,815 - GFF2587 0.27 -0.7
269,815 - GFF2587 0.27 -0.7
269,815 - GFF2587 0.27 -0.4
269,815 - GFF2587 0.27 -0.2
269,815 - GFF2587 0.27 -1.1

Or see this region's nucleotide sequence