Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF257 and GFF258 are separated by 248 nucleotides GFF258 and GFF259 are separated by 31 nucleotides
GFF257 - Phosphomethylpyrimidine synthase, at 270,731 to 272,605
GFF257
GFF258 - tRNA dimethylallyltransferase, at 272,854 to 273,759
GFF258
GFF259 - hypothetical protein, at 273,791 to 274,690
GFF259
Position (kb) 272
273
274 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 271.938 kb on - strand, within GFF257 at 271.938 kb on - strand, within GFF257 at 272.079 kb on - strand, within GFF257 at 272.144 kb on + strand, within GFF257 at 272.144 kb on + strand, within GFF257 at 272.144 kb on + strand, within GFF257 at 272.144 kb on + strand, within GFF257 at 272.145 kb on - strand, within GFF257 at 272.145 kb on - strand, within GFF257 at 272.210 kb on + strand, within GFF257 at 272.211 kb on - strand, within GFF257 at 272.550 kb on + strand at 272.550 kb on + strand at 272.550 kb on + strand at 272.551 kb on - strand at 272.551 kb on - strand at 272.555 kb on + strand at 272.555 kb on + strand at 272.556 kb on - strand at 272.937 kb on - strand at 273.458 kb on + strand, within GFF258 at 273.458 kb on + strand, within GFF258 at 273.487 kb on + strand, within GFF258 at 273.554 kb on + strand, within GFF258 at 273.581 kb on + strand, within GFF258 at 273.651 kb on - strand, within GFF258 at 274.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 271,938 - GFF257 0.64 -0.7 271,938 - GFF257 0.64 -1.1 272,079 - GFF257 0.72 -0.7 272,144 + GFF257 0.75 -1.0 272,144 + GFF257 0.75 -1.8 272,144 + GFF257 0.75 -3.9 272,144 + GFF257 0.75 -0.6 272,145 - GFF257 0.75 -3.4 272,145 - GFF257 0.75 -2.4 272,210 + GFF257 0.79 +0.1 272,211 - GFF257 0.79 -1.9 272,550 + -0.2 272,550 + -0.2 272,550 + -0.9 272,551 - -1.5 272,551 - +1.3 272,555 + -0.0 272,555 + +0.3 272,556 - +0.3 272,937 - -0.2 273,458 + GFF258 0.67 -2.2 273,458 + GFF258 0.67 -0.4 273,487 + GFF258 0.70 -0.2 273,554 + GFF258 0.77 -0.2 273,581 + GFF258 0.80 +1.0 273,651 - GFF258 0.88 +0.6 274,712 - +1.2
Or see this region's nucleotide sequence