Strain Fitness in Xanthobacter sp. DMC5 around GFF2576

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2574 and GFF2575 are separated by 88 nucleotidesGFF2575 and GFF2576 are separated by 7 nucleotidesGFF2576 and GFF2577 overlap by 4 nucleotidesGFF2577 and GFF2578 overlap by 4 nucleotides GFF2574 - putative protein, at 252,480 to 254,987 GFF2574 GFF2575 - putative protein, at 255,076 to 255,963 GFF2575 GFF2576 - C4-dicarboxylate TRAP transporter large permease protein DctM, at 255,971 to 257,323 GFF2576 GFF2577 - hypothetical protein, at 257,320 to 257,880 GFF2577 GFF2578 - Solute-binding protein, at 257,877 to 258,926 GFF2578 Position (kb) 255 256 257 258Strain fitness (log2 ratio) -2 -1 0 1 2 3at 255.083 kb on - strandat 255.083 kb on - strandat 255.088 kb on - strandat 255.088 kb on - strandat 255.088 kb on - strandat 255.106 kb on + strandat 255.106 kb on + strandat 255.106 kb on + strandat 255.106 kb on + strandat 255.106 kb on + strandat 255.106 kb on + strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.107 kb on - strandat 255.112 kb on + strandat 255.112 kb on + strandat 255.112 kb on + strandat 255.112 kb on + strandat 255.113 kb on - strandat 255.113 kb on - strandat 255.113 kb on - strandat 255.562 kb on + strand, within GFF2575at 255.626 kb on + strand, within GFF2575at 255.627 kb on - strand, within GFF2575at 255.627 kb on - strand, within GFF2575at 255.688 kb on + strand, within GFF2575at 255.689 kb on - strand, within GFF2575at 255.689 kb on - strand, within GFF2575at 255.868 kb on + strand, within GFF2575at 255.962 kb on - strandat 255.962 kb on - strandat 256.167 kb on + strand, within GFF2576at 256.383 kb on + strand, within GFF2576at 256.384 kb on - strand, within GFF2576at 256.384 kb on - strand, within GFF2576at 256.390 kb on + strand, within GFF2576at 256.391 kb on - strand, within GFF2576at 256.395 kb on + strand, within GFF2576at 256.395 kb on + strand, within GFF2576at 256.395 kb on + strand, within GFF2576at 256.395 kb on + strand, within GFF2576at 256.395 kb on + strand, within GFF2576at 256.396 kb on - strand, within GFF2576at 256.396 kb on - strand, within GFF2576at 256.396 kb on - strand, within GFF2576at 256.396 kb on - strand, within GFF2576at 256.402 kb on - strand, within GFF2576at 256.497 kb on + strand, within GFF2576at 256.563 kb on + strand, within GFF2576at 256.573 kb on - strand, within GFF2576at 256.573 kb on - strand, within GFF2576at 256.698 kb on + strand, within GFF2576at 256.698 kb on + strand, within GFF2576at 256.698 kb on + strand, within GFF2576at 256.699 kb on - strand, within GFF2576at 256.719 kb on + strand, within GFF2576at 256.719 kb on + strand, within GFF2576at 256.719 kb on + strand, within GFF2576at 256.720 kb on - strand, within GFF2576at 256.720 kb on - strand, within GFF2576at 256.720 kb on - strand, within GFF2576at 256.747 kb on - strand, within GFF2576at 256.833 kb on + strand, within GFF2576at 256.833 kb on + strand, within GFF2576at 256.833 kb on + strand, within GFF2576at 256.833 kb on + strand, within GFF2576at 256.833 kb on + strand, within GFF2576at 256.834 kb on - strand, within GFF2576at 257.074 kb on - strand, within GFF2576at 257.074 kb on - strand, within GFF2576at 257.074 kb on - strand, within GFF2576at 257.166 kb on + strand, within GFF2576at 257.166 kb on + strand, within GFF2576at 257.167 kb on - strand, within GFF2576at 257.167 kb on - strand, within GFF2576at 257.186 kb on - strand, within GFF2576at 257.295 kb on + strandat 257.295 kb on + strandat 257.365 kb on + strandat 257.401 kb on + strand, within GFF2577at 257.401 kb on + strand, within GFF2577at 257.401 kb on + strand, within GFF2577at 257.402 kb on - strand, within GFF2577at 257.402 kb on - strand, within GFF2577at 257.402 kb on - strand, within GFF2577at 257.678 kb on + strand, within GFF2577at 257.678 kb on + strand, within GFF2577at 257.679 kb on - strand, within GFF2577at 257.679 kb on - strand, within GFF2577at 257.679 kb on - strand, within GFF2577at 257.679 kb on - strand, within GFF2577at 257.679 kb on - strand, within GFF2577at 257.679 kb on - strand, within GFF2577at 257.679 kb on - strand, within GFF2577at 257.679 kb on - strand, within GFF2577at 257.717 kb on + strand, within GFF2577at 257.718 kb on - strand, within GFF2577at 257.718 kb on - strand, within GFF2577at 257.718 kb on - strand, within GFF2577at 257.740 kb on + strand, within GFF2577at 257.740 kb on + strand, within GFF2577at 257.791 kb on + strand, within GFF2577at 257.791 kb on + strand, within GFF2577at 257.792 kb on - strand, within GFF2577at 257.938 kb on + strandat 258.047 kb on + strand, within GFF2578at 258.048 kb on - strand, within GFF2578at 258.181 kb on + strand, within GFF2578at 258.181 kb on + strand, within GFF2578at 258.181 kb on + strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.296 kb on - strand, within GFF2578at 258.296 kb on - strand, within GFF2578at 258.296 kb on - strand, within GFF2578at 258.296 kb on - strand, within GFF2578

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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255,083 - -0.7
255,083 - +1.3
255,088 - -0.3
255,088 - -0.9
255,088 - -0.5
255,106 + -0.3
255,106 + -0.1
255,106 + -1.9
255,106 + -0.8
255,106 + -0.4
255,106 + -0.6
255,107 - -0.5
255,107 - -0.7
255,107 - -0.8
255,107 - -0.4
255,107 - +0.2
255,107 - +1.4
255,107 - -0.1
255,107 - -0.9
255,107 - -0.9
255,107 - -0.7
255,107 - -0.5
255,107 - -0.3
255,107 - -0.5
255,112 + -0.3
255,112 + +1.5
255,112 + +0.6
255,112 + +0.3
255,113 - -1.0
255,113 - +0.1
255,113 - +0.1
255,562 + GFF2575 0.55 -0.2
255,626 + GFF2575 0.62 -0.2
255,627 - GFF2575 0.62 -0.0
255,627 - GFF2575 0.62 -1.2
255,688 + GFF2575 0.69 +0.1
255,689 - GFF2575 0.69 -0.1
255,689 - GFF2575 0.69 +0.7
255,868 + GFF2575 0.89 +0.9
255,962 - -1.3
255,962 - -0.7
256,167 + GFF2576 0.14 -0.7
256,383 + GFF2576 0.30 +0.6
256,384 - GFF2576 0.31 -0.6
256,384 - GFF2576 0.31 -0.2
256,390 + GFF2576 0.31 -0.6
256,391 - GFF2576 0.31 +1.8
256,395 + GFF2576 0.31 -0.7
256,395 + GFF2576 0.31 -1.2
256,395 + GFF2576 0.31 -0.1
256,395 + GFF2576 0.31 -1.3
256,395 + GFF2576 0.31 -0.2
256,396 - GFF2576 0.31 +0.8
256,396 - GFF2576 0.31 +0.0
256,396 - GFF2576 0.31 +0.1
256,396 - GFF2576 0.31 -0.4
256,402 - GFF2576 0.32 +1.3
256,497 + GFF2576 0.39 +0.2
256,563 + GFF2576 0.44 +0.5
256,573 - GFF2576 0.44 +0.3
256,573 - GFF2576 0.44 -1.4
256,698 + GFF2576 0.54 -0.2
256,698 + GFF2576 0.54 +1.7
256,698 + GFF2576 0.54 -0.8
256,699 - GFF2576 0.54 -0.1
256,719 + GFF2576 0.55 -0.9
256,719 + GFF2576 0.55 +0.4
256,719 + GFF2576 0.55 +1.7
256,720 - GFF2576 0.55 +0.0
256,720 - GFF2576 0.55 +0.3
256,720 - GFF2576 0.55 +0.1
256,747 - GFF2576 0.57 -0.8
256,833 + GFF2576 0.64 +0.3
256,833 + GFF2576 0.64 -1.0
256,833 + GFF2576 0.64 +0.3
256,833 + GFF2576 0.64 +1.2
256,833 + GFF2576 0.64 -0.7
256,834 - GFF2576 0.64 -1.1
257,074 - GFF2576 0.82 -2.6
257,074 - GFF2576 0.82 +1.3
257,074 - GFF2576 0.82 +0.9
257,166 + GFF2576 0.88 -0.3
257,166 + GFF2576 0.88 -1.9
257,167 - GFF2576 0.88 +1.1
257,167 - GFF2576 0.88 +1.0
257,186 - GFF2576 0.90 -1.1
257,295 + -0.6
257,295 + -0.3
257,365 + -0.4
257,401 + GFF2577 0.14 +0.5
257,401 + GFF2577 0.14 +2.3
257,401 + GFF2577 0.14 -0.9
257,402 - GFF2577 0.15 +0.4
257,402 - GFF2577 0.15 -0.1
257,402 - GFF2577 0.15 -0.0
257,678 + GFF2577 0.64 +0.4
257,678 + GFF2577 0.64 -0.2
257,679 - GFF2577 0.64 +0.6
257,679 - GFF2577 0.64 +0.1
257,679 - GFF2577 0.64 +0.4
257,679 - GFF2577 0.64 -0.7
257,679 - GFF2577 0.64 +0.5
257,679 - GFF2577 0.64 +0.3
257,679 - GFF2577 0.64 +0.3
257,679 - GFF2577 0.64 -0.4
257,717 + GFF2577 0.71 +1.1
257,718 - GFF2577 0.71 -0.6
257,718 - GFF2577 0.71 +0.5
257,718 - GFF2577 0.71 -0.1
257,740 + GFF2577 0.75 +1.4
257,740 + GFF2577 0.75 +1.3
257,791 + GFF2577 0.84 +0.1
257,791 + GFF2577 0.84 -0.3
257,792 - GFF2577 0.84 +0.6
257,938 + -0.1
258,047 + GFF2578 0.16 +0.9
258,048 - GFF2578 0.16 -0.2
258,181 + GFF2578 0.29 -0.7
258,181 + GFF2578 0.29 -0.1
258,181 + GFF2578 0.29 -1.0
258,182 - GFF2578 0.29 -0.5
258,182 - GFF2578 0.29 -0.2
258,182 - GFF2578 0.29 -0.7
258,182 - GFF2578 0.29 -1.4
258,182 - GFF2578 0.29 -0.3
258,295 + GFF2578 0.40 -0.5
258,295 + GFF2578 0.40 +0.1
258,295 + GFF2578 0.40 +0.9
258,295 + GFF2578 0.40 -0.1
258,295 + GFF2578 0.40 +3.0
258,296 - GFF2578 0.40 -0.3
258,296 - GFF2578 0.40 +1.3
258,296 - GFF2578 0.40 -0.4
258,296 - GFF2578 0.40 +0.6

Or see this region's nucleotide sequence