Strain Fitness in Xanthobacter sp. DMC5 around GFF2573

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2572 and GFF2573 are separated by 218 nucleotidesGFF2573 and GFF2574 are separated by 170 nucleotides GFF2572 - Efflux pump membrane transporter BepE, at 245,456 to 248,665 GFF2572 GFF2573 - hypothetical protein, at 248,884 to 252,309 GFF2573 GFF2574 - putative protein, at 252,480 to 254,987 GFF2574 Position (kb) 248 249 250 251 252 253Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 247.919 kb on + strand, within GFF2572at 247.929 kb on - strand, within GFF2572at 248.057 kb on + strand, within GFF2572at 248.087 kb on + strand, within GFF2572at 248.087 kb on + strand, within GFF2572at 248.087 kb on + strand, within GFF2572at 248.088 kb on - strand, within GFF2572at 248.088 kb on - strand, within GFF2572at 248.088 kb on - strand, within GFF2572at 248.088 kb on - strand, within GFF2572at 248.091 kb on - strand, within GFF2572at 248.120 kb on + strand, within GFF2572at 248.120 kb on + strand, within GFF2572at 248.121 kb on - strand, within GFF2572at 248.121 kb on - strand, within GFF2572at 248.121 kb on - strand, within GFF2572at 248.141 kb on + strand, within GFF2572at 248.141 kb on + strand, within GFF2572at 248.142 kb on - strand, within GFF2572at 248.142 kb on - strand, within GFF2572at 248.243 kb on + strand, within GFF2572at 248.243 kb on + strand, within GFF2572at 248.244 kb on - strand, within GFF2572at 248.309 kb on + strand, within GFF2572at 248.309 kb on + strand, within GFF2572at 248.309 kb on + strand, within GFF2572at 248.309 kb on + strand, within GFF2572at 248.310 kb on - strand, within GFF2572at 248.310 kb on - strand, within GFF2572at 248.310 kb on - strand, within GFF2572at 248.540 kb on + strandat 248.540 kb on + strandat 248.540 kb on + strandat 248.540 kb on + strandat 248.540 kb on + strandat 248.541 kb on - strandat 248.541 kb on - strandat 248.541 kb on - strandat 248.846 kb on + strandat 248.846 kb on + strandat 248.882 kb on - strandat 248.920 kb on + strandat 248.921 kb on - strandat 248.926 kb on + strandat 248.926 kb on + strandat 248.926 kb on + strandat 248.926 kb on + strandat 248.926 kb on + strandat 248.927 kb on - strandat 248.927 kb on - strandat 248.927 kb on - strandat 248.927 kb on - strandat 248.927 kb on - strandat 248.927 kb on - strandat 249.176 kb on - strandat 249.199 kb on + strandat 249.271 kb on + strand, within GFF2573at 249.271 kb on + strand, within GFF2573at 249.272 kb on - strand, within GFF2573at 249.272 kb on - strand, within GFF2573at 249.272 kb on - strand, within GFF2573at 249.322 kb on + strand, within GFF2573at 249.322 kb on + strand, within GFF2573at 249.322 kb on + strand, within GFF2573at 249.322 kb on + strand, within GFF2573at 249.323 kb on - strand, within GFF2573at 249.355 kb on + strand, within GFF2573at 249.355 kb on + strand, within GFF2573at 249.355 kb on + strand, within GFF2573at 249.494 kb on - strand, within GFF2573at 249.494 kb on - strand, within GFF2573at 249.676 kb on + strand, within GFF2573at 249.676 kb on + strand, within GFF2573at 249.677 kb on - strand, within GFF2573at 249.677 kb on - strand, within GFF2573at 249.703 kb on + strand, within GFF2573at 249.703 kb on + strand, within GFF2573at 250.018 kb on + strand, within GFF2573at 250.018 kb on + strand, within GFF2573at 250.018 kb on + strand, within GFF2573at 250.036 kb on + strand, within GFF2573at 250.141 kb on + strand, within GFF2573at 250.141 kb on + strand, within GFF2573at 250.142 kb on - strand, within GFF2573at 250.142 kb on - strand, within GFF2573at 250.243 kb on + strand, within GFF2573at 250.243 kb on + strand, within GFF2573at 250.243 kb on + strand, within GFF2573at 250.243 kb on + strand, within GFF2573at 250.244 kb on - strand, within GFF2573at 250.244 kb on - strand, within GFF2573at 250.244 kb on - strand, within GFF2573at 250.244 kb on - strand, within GFF2573at 250.244 kb on - strand, within GFF2573at 250.244 kb on - strand, within GFF2573at 250.244 kb on - strand, within GFF2573at 250.246 kb on + strand, within GFF2573at 250.246 kb on + strand, within GFF2573at 250.246 kb on + strand, within GFF2573at 250.246 kb on + strand, within GFF2573at 250.246 kb on + strand, within GFF2573at 250.246 kb on + strand, within GFF2573at 250.246 kb on + strand, within GFF2573at 250.247 kb on - strand, within GFF2573at 250.247 kb on - strand, within GFF2573at 250.247 kb on - strand, within GFF2573at 250.247 kb on - strand, within GFF2573at 250.247 kb on - strand, within GFF2573at 250.435 kb on + strand, within GFF2573at 250.435 kb on + strand, within GFF2573at 250.435 kb on + strand, within GFF2573at 250.436 kb on - strand, within GFF2573at 250.436 kb on - strand, within GFF2573at 250.436 kb on - strand, within GFF2573at 250.436 kb on - strand, within GFF2573at 250.510 kb on + strand, within GFF2573at 250.534 kb on + strand, within GFF2573at 250.534 kb on + strand, within GFF2573at 250.534 kb on + strand, within GFF2573at 250.535 kb on - strand, within GFF2573at 250.535 kb on - strand, within GFF2573at 250.604 kb on - strand, within GFF2573at 250.691 kb on - strand, within GFF2573at 250.754 kb on - strand, within GFF2573at 250.754 kb on - strand, within GFF2573at 250.766 kb on - strand, within GFF2573at 250.870 kb on + strand, within GFF2573at 250.870 kb on + strand, within GFF2573at 250.871 kb on - strand, within GFF2573at 250.871 kb on - strand, within GFF2573at 250.871 kb on - strand, within GFF2573at 250.871 kb on - strand, within GFF2573at 251.009 kb on - strand, within GFF2573at 251.063 kb on - strand, within GFF2573at 251.221 kb on + strand, within GFF2573at 251.248 kb on + strand, within GFF2573at 251.248 kb on + strand, within GFF2573at 251.248 kb on + strand, within GFF2573at 251.249 kb on - strand, within GFF2573at 251.249 kb on - strand, within GFF2573at 251.323 kb on + strand, within GFF2573at 251.323 kb on + strand, within GFF2573at 251.323 kb on + strand, within GFF2573at 251.323 kb on + strand, within GFF2573at 251.323 kb on + strand, within GFF2573at 251.324 kb on - strand, within GFF2573at 251.324 kb on - strand, within GFF2573at 251.470 kb on + strand, within GFF2573at 251.471 kb on - strand, within GFF2573at 251.471 kb on - strand, within GFF2573at 251.665 kb on + strand, within GFF2573at 251.666 kb on - strand, within GFF2573at 251.666 kb on - strand, within GFF2573at 251.666 kb on - strand, within GFF2573at 251.666 kb on - strand, within GFF2573at 251.666 kb on - strand, within GFF2573at 251.666 kb on - strand, within GFF2573at 251.716 kb on + strand, within GFF2573at 251.716 kb on + strand, within GFF2573at 251.775 kb on + strand, within GFF2573at 251.775 kb on + strand, within GFF2573at 251.776 kb on - strand, within GFF2573at 251.872 kb on + strand, within GFF2573at 251.872 kb on + strand, within GFF2573at 251.872 kb on + strand, within GFF2573at 251.873 kb on - strand, within GFF2573at 251.992 kb on + strandat 251.992 kb on + strandat 251.992 kb on + strandat 251.992 kb on + strandat 251.992 kb on + strandat 251.992 kb on + strandat 251.992 kb on + strandat 251.992 kb on + strandat 251.993 kb on - strandat 251.993 kb on - strandat 251.993 kb on - strandat 251.993 kb on - strandat 251.993 kb on - strandat 252.010 kb on + strandat 252.011 kb on - strandat 252.011 kb on - strandat 252.121 kb on + strandat 252.121 kb on + strandat 252.122 kb on - strandat 252.122 kb on - strandat 252.124 kb on + strandat 252.124 kb on + strandat 252.124 kb on + strandat 252.124 kb on + strandat 252.124 kb on + strandat 252.125 kb on - strandat 252.125 kb on - strandat 252.125 kb on - strandat 252.125 kb on - strandat 252.125 kb on - strandat 252.151 kb on + strandat 252.151 kb on + strandat 252.152 kb on - strandat 252.152 kb on - strandat 252.175 kb on + strandat 252.408 kb on + strandat 252.409 kb on - strandat 252.439 kb on + strandat 252.684 kb on + strandat 252.685 kb on - strandat 252.717 kb on + strandat 252.717 kb on + strandat 252.812 kb on + strand, within GFF2574at 252.812 kb on + strand, within GFF2574at 252.855 kb on + strand, within GFF2574at 252.855 kb on + strand, within GFF2574at 252.856 kb on - strand, within GFF2574at 252.963 kb on + strand, within GFF2574at 252.976 kb on - strand, within GFF2574at 252.976 kb on - strand, within GFF2574at 253.230 kb on + strand, within GFF2574at 253.231 kb on - strand, within GFF2574at 253.258 kb on - strand, within GFF2574at 253.308 kb on - strand, within GFF2574

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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247,919 + GFF2572 0.77 +0.8
247,929 - GFF2572 0.77 +0.1
248,057 + GFF2572 0.81 -1.4
248,087 + GFF2572 0.82 -0.9
248,087 + GFF2572 0.82 +0.6
248,087 + GFF2572 0.82 -0.7
248,088 - GFF2572 0.82 +0.5
248,088 - GFF2572 0.82 -0.2
248,088 - GFF2572 0.82 -0.9
248,088 - GFF2572 0.82 +0.1
248,091 - GFF2572 0.82 +0.4
248,120 + GFF2572 0.83 -1.2
248,120 + GFF2572 0.83 +0.8
248,121 - GFF2572 0.83 -0.5
248,121 - GFF2572 0.83 +0.3
248,121 - GFF2572 0.83 -0.0
248,141 + GFF2572 0.84 -1.1
248,141 + GFF2572 0.84 -1.2
248,142 - GFF2572 0.84 -0.9
248,142 - GFF2572 0.84 -0.4
248,243 + GFF2572 0.87 -2.1
248,243 + GFF2572 0.87 +0.6
248,244 - GFF2572 0.87 +0.3
248,309 + GFF2572 0.89 -0.0
248,309 + GFF2572 0.89 +0.3
248,309 + GFF2572 0.89 -0.2
248,309 + GFF2572 0.89 +0.9
248,310 - GFF2572 0.89 -1.2
248,310 - GFF2572 0.89 +0.8
248,310 - GFF2572 0.89 -0.5
248,540 + +0.1
248,540 + -0.2
248,540 + -1.9
248,540 + -0.3
248,540 + -1.1
248,541 - +0.3
248,541 - -0.5
248,541 - +0.3
248,846 + +0.0
248,846 + -0.9
248,882 - -1.5
248,920 + -0.1
248,921 - -0.5
248,926 + -0.2
248,926 + +0.2
248,926 + -1.7
248,926 + +0.5
248,926 + -0.1
248,927 - -0.3
248,927 - -0.3
248,927 - +1.3
248,927 - +0.1
248,927 - +1.0
248,927 - -1.2
249,176 - -0.2
249,199 + -1.0
249,271 + GFF2573 0.11 -0.6
249,271 + GFF2573 0.11 -1.2
249,272 - GFF2573 0.11 -0.4
249,272 - GFF2573 0.11 +0.7
249,272 - GFF2573 0.11 -0.3
249,322 + GFF2573 0.13 -1.0
249,322 + GFF2573 0.13 +0.1
249,322 + GFF2573 0.13 +0.4
249,322 + GFF2573 0.13 +0.1
249,323 - GFF2573 0.13 -1.3
249,355 + GFF2573 0.14 -1.0
249,355 + GFF2573 0.14 -0.3
249,355 + GFF2573 0.14 -0.2
249,494 - GFF2573 0.18 +0.1
249,494 - GFF2573 0.18 +0.1
249,676 + GFF2573 0.23 -0.2
249,676 + GFF2573 0.23 -0.5
249,677 - GFF2573 0.23 +0.2
249,677 - GFF2573 0.23 +1.9
249,703 + GFF2573 0.24 +0.6
249,703 + GFF2573 0.24 -0.2
250,018 + GFF2573 0.33 -0.8
250,018 + GFF2573 0.33 -0.1
250,018 + GFF2573 0.33 +0.6
250,036 + GFF2573 0.34 -0.1
250,141 + GFF2573 0.37 -0.9
250,141 + GFF2573 0.37 -0.0
250,142 - GFF2573 0.37 -0.5
250,142 - GFF2573 0.37 +1.1
250,243 + GFF2573 0.40 -0.7
250,243 + GFF2573 0.40 -0.6
250,243 + GFF2573 0.40 -0.1
250,243 + GFF2573 0.40 +0.5
250,244 - GFF2573 0.40 -0.4
250,244 - GFF2573 0.40 +0.5
250,244 - GFF2573 0.40 +0.3
250,244 - GFF2573 0.40 +0.6
250,244 - GFF2573 0.40 -0.4
250,244 - GFF2573 0.40 +0.3
250,244 - GFF2573 0.40 +0.6
250,246 + GFF2573 0.40 -0.1
250,246 + GFF2573 0.40 -0.9
250,246 + GFF2573 0.40 -0.0
250,246 + GFF2573 0.40 -0.3
250,246 + GFF2573 0.40 -1.9
250,246 + GFF2573 0.40 +0.2
250,246 + GFF2573 0.40 -0.3
250,247 - GFF2573 0.40 +1.3
250,247 - GFF2573 0.40 +0.3
250,247 - GFF2573 0.40 -0.8
250,247 - GFF2573 0.40 +0.1
250,247 - GFF2573 0.40 -1.7
250,435 + GFF2573 0.45 -0.7
250,435 + GFF2573 0.45 -0.3
250,435 + GFF2573 0.45 +0.4
250,436 - GFF2573 0.45 -1.2
250,436 - GFF2573 0.45 +0.5
250,436 - GFF2573 0.45 -1.1
250,436 - GFF2573 0.45 -1.7
250,510 + GFF2573 0.47 -1.6
250,534 + GFF2573 0.48 +0.5
250,534 + GFF2573 0.48 +0.4
250,534 + GFF2573 0.48 +0.3
250,535 - GFF2573 0.48 -0.6
250,535 - GFF2573 0.48 +0.0
250,604 - GFF2573 0.50 -0.9
250,691 - GFF2573 0.53 +0.8
250,754 - GFF2573 0.55 -3.1
250,754 - GFF2573 0.55 +0.1
250,766 - GFF2573 0.55 +0.2
250,870 + GFF2573 0.58 +0.2
250,870 + GFF2573 0.58 -0.5
250,871 - GFF2573 0.58 +0.5
250,871 - GFF2573 0.58 -1.2
250,871 - GFF2573 0.58 +0.5
250,871 - GFF2573 0.58 -0.9
251,009 - GFF2573 0.62 +0.2
251,063 - GFF2573 0.64 +2.3
251,221 + GFF2573 0.68 +0.8
251,248 + GFF2573 0.69 +1.0
251,248 + GFF2573 0.69 -1.1
251,248 + GFF2573 0.69 +0.1
251,249 - GFF2573 0.69 +0.1
251,249 - GFF2573 0.69 +0.8
251,323 + GFF2573 0.71 +1.1
251,323 + GFF2573 0.71 -0.6
251,323 + GFF2573 0.71 -0.5
251,323 + GFF2573 0.71 -0.1
251,323 + GFF2573 0.71 +0.7
251,324 - GFF2573 0.71 -0.4
251,324 - GFF2573 0.71 -0.2
251,470 + GFF2573 0.75 -1.3
251,471 - GFF2573 0.76 +0.7
251,471 - GFF2573 0.76 -0.9
251,665 + GFF2573 0.81 -1.4
251,666 - GFF2573 0.81 -0.2
251,666 - GFF2573 0.81 -1.8
251,666 - GFF2573 0.81 -0.1
251,666 - GFF2573 0.81 -0.9
251,666 - GFF2573 0.81 -0.2
251,666 - GFF2573 0.81 -0.2
251,716 + GFF2573 0.83 -0.3
251,716 + GFF2573 0.83 +0.4
251,775 + GFF2573 0.84 +1.6
251,775 + GFF2573 0.84 -0.0
251,776 - GFF2573 0.84 -0.6
251,872 + GFF2573 0.87 +0.1
251,872 + GFF2573 0.87 +0.2
251,872 + GFF2573 0.87 -0.2
251,873 - GFF2573 0.87 -0.8
251,992 + -0.0
251,992 + -0.3
251,992 + +0.7
251,992 + -1.4
251,992 + +0.2
251,992 + -0.4
251,992 + -0.5
251,992 + -0.3
251,993 - +0.4
251,993 - -0.5
251,993 - +0.7
251,993 - -0.3
251,993 - -1.7
252,010 + -0.0
252,011 - -0.7
252,011 - -0.5
252,121 + -1.8
252,121 + -0.3
252,122 - -0.4
252,122 - -0.3
252,124 + +0.5
252,124 + -0.4
252,124 + -1.0
252,124 + -0.3
252,124 + -1.0
252,125 - +0.5
252,125 - -0.8
252,125 - -0.7
252,125 - -0.6
252,125 - -0.3
252,151 + +0.5
252,151 + -0.0
252,152 - -1.0
252,152 - -0.7
252,175 + +0.3
252,408 + -0.7
252,409 - -1.7
252,439 + -1.8
252,684 + +1.3
252,685 - -0.9
252,717 + -1.6
252,717 + -1.3
252,812 + GFF2574 0.13 +1.8
252,812 + GFF2574 0.13 -0.8
252,855 + GFF2574 0.15 +0.3
252,855 + GFF2574 0.15 -0.6
252,856 - GFF2574 0.15 -0.1
252,963 + GFF2574 0.19 +0.5
252,976 - GFF2574 0.20 -1.1
252,976 - GFF2574 0.20 +0.8
253,230 + GFF2574 0.30 -0.9
253,231 - GFF2574 0.30 +0.8
253,258 - GFF2574 0.31 -0.3
253,308 - GFF2574 0.33 +0.7

Or see this region's nucleotide sequence