Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2568 and GFF2569 are separated by 105 nucleotides GFF2569 and GFF2570 are separated by 50 nucleotides GFF2570 and GFF2571 are separated by 385 nucleotides
GFF2568 - hypothetical protein, at 239,303 to 240,160
GFF2568
GFF2569 - hypothetical protein, at 240,266 to 240,895
GFF2569
GFF2570 - Protein translocase subunit SecA, at 240,946 to 243,726
GFF2570
GFF2571 - Efflux pump periplasmic linker BepF, at 244,112 to 245,428
GFF2571
Position (kb) 240
241
242
243
244 Strain fitness (log2 ratio) -1
0
1
2 at 239.972 kb on + strand, within GFF2568 at 239.973 kb on - strand, within GFF2568 at 239.973 kb on - strand, within GFF2568 at 239.984 kb on + strand, within GFF2568 at 240.045 kb on - strand, within GFF2568 at 240.050 kb on + strand, within GFF2568 at 240.050 kb on + strand, within GFF2568 at 240.051 kb on - strand, within GFF2568 at 240.132 kb on - strand at 240.132 kb on - strand at 240.132 kb on - strand at 240.545 kb on + strand, within GFF2569 at 240.546 kb on - strand, within GFF2569 at 240.546 kb on - strand, within GFF2569 at 240.546 kb on - strand, within GFF2569 at 240.546 kb on - strand, within GFF2569 at 240.546 kb on - strand, within GFF2569 at 240.546 kb on - strand, within GFF2569 at 240.546 kb on - strand, within GFF2569 at 240.714 kb on - strand, within GFF2569 at 240.755 kb on + strand, within GFF2569 at 240.755 kb on + strand, within GFF2569 at 240.755 kb on + strand, within GFF2569 at 240.756 kb on - strand, within GFF2569 at 240.756 kb on - strand, within GFF2569 at 240.761 kb on + strand, within GFF2569 at 240.975 kb on - strand at 243.737 kb on - strand at 243.921 kb on - strand at 243.921 kb on - strand at 244.077 kb on + strand at 244.077 kb on + strand at 244.077 kb on + strand at 244.077 kb on + strand at 244.078 kb on - strand at 244.078 kb on - strand at 244.078 kb on - strand at 244.112 kb on - strand at 244.208 kb on + strand at 244.208 kb on + strand at 244.209 kb on - strand at 244.209 kb on - strand at 244.209 kb on - strand at 244.212 kb on + strand at 244.342 kb on + strand, within GFF2571 at 244.342 kb on + strand, within GFF2571 at 244.355 kb on + strand, within GFF2571 at 244.356 kb on - strand, within GFF2571 at 244.415 kb on + strand, within GFF2571 at 244.415 kb on + strand, within GFF2571 at 244.415 kb on + strand, within GFF2571 at 244.416 kb on - strand, within GFF2571 at 244.416 kb on - strand, within GFF2571 at 244.416 kb on - strand, within GFF2571 at 244.633 kb on + strand, within GFF2571 at 244.634 kb on - strand, within GFF2571 at 244.634 kb on - strand, within GFF2571 at 244.705 kb on + strand, within GFF2571 at 244.706 kb on - strand, within GFF2571
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 239,972 + GFF2568 0.78 -0.5 239,973 - GFF2568 0.78 -0.9 239,973 - GFF2568 0.78 -0.8 239,984 + GFF2568 0.79 -0.1 240,045 - GFF2568 0.86 -0.4 240,050 + GFF2568 0.87 -0.2 240,050 + GFF2568 0.87 -0.5 240,051 - GFF2568 0.87 +0.5 240,132 - -0.2 240,132 - +0.5 240,132 - -0.7 240,545 + GFF2569 0.44 +0.5 240,546 - GFF2569 0.44 +0.7 240,546 - GFF2569 0.44 -1.6 240,546 - GFF2569 0.44 -1.2 240,546 - GFF2569 0.44 +1.0 240,546 - GFF2569 0.44 +1.0 240,546 - GFF2569 0.44 -1.0 240,546 - GFF2569 0.44 -0.2 240,714 - GFF2569 0.71 -0.8 240,755 + GFF2569 0.78 -0.3 240,755 + GFF2569 0.78 -1.1 240,755 + GFF2569 0.78 +0.2 240,756 - GFF2569 0.78 +0.4 240,756 - GFF2569 0.78 -0.1 240,761 + GFF2569 0.79 +2.3 240,975 - -1.2 243,737 - -0.0 243,921 - +0.2 243,921 - -0.3 244,077 + -0.4 244,077 + +0.3 244,077 + +0.5 244,077 + -0.3 244,078 - +0.8 244,078 - +1.9 244,078 - -0.5 244,112 - -1.4 244,208 + +0.0 244,208 + -0.4 244,209 - -0.2 244,209 - -1.4 244,209 - -0.4 244,212 + +1.0 244,342 + GFF2571 0.17 +0.0 244,342 + GFF2571 0.17 -0.3 244,355 + GFF2571 0.18 -1.5 244,356 - GFF2571 0.19 +0.3 244,415 + GFF2571 0.23 -0.2 244,415 + GFF2571 0.23 -0.2 244,415 + GFF2571 0.23 +0.8 244,416 - GFF2571 0.23 -1.2 244,416 - GFF2571 0.23 +0.3 244,416 - GFF2571 0.23 +0.3 244,633 + GFF2571 0.40 +0.3 244,634 - GFF2571 0.40 -0.9 244,634 - GFF2571 0.40 +0.5 244,705 + GFF2571 0.45 +0.4 244,706 - GFF2571 0.45 +1.2
Or see this region's nucleotide sequence