Strain Fitness in Xanthobacter sp. DMC5 around GFF2552

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2551 and GFF2552 are separated by 134 nucleotidesGFF2552 and GFF2553 are separated by 82 nucleotides GFF2551 - Inner membrane ABC transporter permease protein YcjP, at 223,759 to 224,649 GFF2551 GFF2552 - hypothetical protein, at 224,784 to 225,287 GFF2552 GFF2553 - Mannitol 2-dehydrogenase, at 225,370 to 226,848 GFF2553 Position (kb) 224 225 226Strain fitness (log2 ratio) -2 -1 0 1at 223.810 kb on + strandat 223.810 kb on + strandat 223.811 kb on - strandat 223.811 kb on - strandat 223.891 kb on + strand, within GFF2551at 223.948 kb on + strand, within GFF2551at 223.949 kb on - strand, within GFF2551at 223.993 kb on + strand, within GFF2551at 223.994 kb on - strand, within GFF2551at 223.994 kb on - strand, within GFF2551at 223.994 kb on - strand, within GFF2551at 224.041 kb on + strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.042 kb on - strand, within GFF2551at 224.064 kb on + strand, within GFF2551at 224.065 kb on - strand, within GFF2551at 224.065 kb on - strand, within GFF2551at 224.065 kb on - strand, within GFF2551at 224.096 kb on - strand, within GFF2551at 224.096 kb on - strand, within GFF2551at 224.159 kb on - strand, within GFF2551at 224.221 kb on + strand, within GFF2551at 224.221 kb on + strand, within GFF2551at 224.221 kb on + strand, within GFF2551at 224.251 kb on + strand, within GFF2551at 224.251 kb on + strand, within GFF2551at 224.252 kb on - strand, within GFF2551at 224.252 kb on - strand, within GFF2551at 224.252 kb on - strand, within GFF2551at 224.252 kb on - strand, within GFF2551at 224.296 kb on + strand, within GFF2551at 224.296 kb on + strand, within GFF2551at 224.296 kb on + strand, within GFF2551at 224.297 kb on - strand, within GFF2551at 224.297 kb on - strand, within GFF2551at 224.297 kb on - strand, within GFF2551at 224.453 kb on - strand, within GFF2551at 224.453 kb on - strand, within GFF2551at 224.533 kb on + strand, within GFF2551at 224.533 kb on + strand, within GFF2551at 224.534 kb on - strand, within GFF2551at 224.534 kb on - strand, within GFF2551at 224.534 kb on - strand, within GFF2551at 224.594 kb on - strandat 224.594 kb on - strandat 224.597 kb on - strandat 224.611 kb on + strandat 224.611 kb on + strandat 224.614 kb on + strandat 224.614 kb on + strandat 224.614 kb on + strandat 224.614 kb on + strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.615 kb on - strandat 224.693 kb on + strandat 224.693 kb on + strandat 224.693 kb on + strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.694 kb on - strandat 224.778 kb on + strandat 224.779 kb on - strandat 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.844 kb on + strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 224.845 kb on - strand, within GFF2552at 225.285 kb on + strandat 225.286 kb on - strandat 225.286 kb on - strandat 225.286 kb on - strandat 225.286 kb on - strandat 225.286 kb on - strandat 225.304 kb on + strandat 225.304 kb on + strandat 225.305 kb on - strandat 225.305 kb on - strandat 225.305 kb on - strandat 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.577 kb on + strand, within GFF2553at 225.578 kb on - strand, within GFF2553at 225.618 kb on - strand, within GFF2553at 225.618 kb on - strand, within GFF2553at 225.618 kb on - strand, within GFF2553at 225.794 kb on + strand, within GFF2553at 225.794 kb on + strand, within GFF2553at 225.795 kb on - strand, within GFF2553at 225.923 kb on + strand, within GFF2553at 225.932 kb on + strand, within GFF2553at 225.932 kb on + strand, within GFF2553at 225.932 kb on + strand, within GFF2553at 225.933 kb on - strand, within GFF2553at 225.933 kb on - strand, within GFF2553at 226.015 kb on + strand, within GFF2553

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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223,810 + -0.1
223,810 + +0.7
223,811 - +0.9
223,811 - -0.0
223,891 + GFF2551 0.15 +0.4
223,948 + GFF2551 0.21 -0.2
223,949 - GFF2551 0.21 -0.9
223,993 + GFF2551 0.26 -0.0
223,994 - GFF2551 0.26 +0.4
223,994 - GFF2551 0.26 -0.4
223,994 - GFF2551 0.26 -1.2
224,041 + GFF2551 0.32 +0.1
224,042 - GFF2551 0.32 -0.0
224,042 - GFF2551 0.32 +0.2
224,042 - GFF2551 0.32 +0.6
224,042 - GFF2551 0.32 -0.2
224,042 - GFF2551 0.32 -1.4
224,064 + GFF2551 0.34 +0.6
224,065 - GFF2551 0.34 +0.5
224,065 - GFF2551 0.34 -0.3
224,065 - GFF2551 0.34 +1.0
224,096 - GFF2551 0.38 -0.3
224,096 - GFF2551 0.38 -0.1
224,159 - GFF2551 0.45 +1.1
224,221 + GFF2551 0.52 -0.4
224,221 + GFF2551 0.52 -0.6
224,221 + GFF2551 0.52 +0.5
224,251 + GFF2551 0.55 +0.2
224,251 + GFF2551 0.55 -0.3
224,252 - GFF2551 0.55 +0.7
224,252 - GFF2551 0.55 -0.7
224,252 - GFF2551 0.55 -0.7
224,252 - GFF2551 0.55 +0.4
224,296 + GFF2551 0.60 -1.5
224,296 + GFF2551 0.60 +0.3
224,296 + GFF2551 0.60 +0.2
224,297 - GFF2551 0.60 -1.8
224,297 - GFF2551 0.60 +0.1
224,297 - GFF2551 0.60 -0.1
224,453 - GFF2551 0.78 -1.5
224,453 - GFF2551 0.78 +0.3
224,533 + GFF2551 0.87 -0.0
224,533 + GFF2551 0.87 -2.1
224,534 - GFF2551 0.87 -0.7
224,534 - GFF2551 0.87 +0.5
224,534 - GFF2551 0.87 -0.2
224,594 - +0.1
224,594 - -0.1
224,597 - +0.6
224,611 + +0.5
224,611 + -1.0
224,614 + -1.1
224,614 + +0.9
224,614 + -0.8
224,614 + +0.1
224,615 - +0.8
224,615 - -0.0
224,615 - +0.3
224,615 - +0.5
224,615 - -0.9
224,615 - +0.3
224,615 - -0.3
224,615 - -1.5
224,615 - +0.3
224,693 + -0.1
224,693 + -0.0
224,693 + -0.6
224,694 - +0.1
224,694 - -0.1
224,694 - +0.3
224,694 - +0.3
224,694 - -1.4
224,778 + -0.3
224,779 - -0.8
224,844 + GFF2552 0.12 +0.5
224,844 + GFF2552 0.12 +1.3
224,844 + GFF2552 0.12 -0.0
224,844 + GFF2552 0.12 -0.6
224,844 + GFF2552 0.12 +0.6
224,844 + GFF2552 0.12 +0.1
224,845 - GFF2552 0.12 +1.1
224,845 - GFF2552 0.12 +1.4
224,845 - GFF2552 0.12 -0.0
224,845 - GFF2552 0.12 -1.1
224,845 - GFF2552 0.12 -1.1
224,845 - GFF2552 0.12 +0.6
224,845 - GFF2552 0.12 +0.1
225,285 + -0.0
225,286 - -0.6
225,286 - -0.4
225,286 - -1.0
225,286 - +0.2
225,286 - +0.2
225,304 + +1.3
225,304 + -0.2
225,305 - +0.4
225,305 - +0.4
225,305 - +0.3
225,577 + GFF2553 0.14 -0.4
225,577 + GFF2553 0.14 +0.2
225,577 + GFF2553 0.14 +0.1
225,577 + GFF2553 0.14 +0.6
225,577 + GFF2553 0.14 -0.4
225,577 + GFF2553 0.14 +0.2
225,577 + GFF2553 0.14 -0.0
225,578 - GFF2553 0.14 +0.5
225,618 - GFF2553 0.17 +0.7
225,618 - GFF2553 0.17 -1.0
225,618 - GFF2553 0.17 +0.2
225,794 + GFF2553 0.29 -0.6
225,794 + GFF2553 0.29 +1.1
225,795 - GFF2553 0.29 -0.0
225,923 + GFF2553 0.37 -0.1
225,932 + GFF2553 0.38 +0.5
225,932 + GFF2553 0.38 -0.8
225,932 + GFF2553 0.38 +1.3
225,933 - GFF2553 0.38 +1.2
225,933 - GFF2553 0.38 -0.4
226,015 + GFF2553 0.44 -0.5

Or see this region's nucleotide sequence