Strain Fitness in Xanthobacter sp. DMC5 around GFF2544

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2542 and GFF2543 are separated by 120 nucleotidesGFF2543 and GFF2544 are separated by 468 nucleotidesGFF2544 and GFF2545 are separated by 264 nucleotides GFF2542 - Pyruvate, phosphate dikinase, at 212,140 to 214,797 GFF2542 GFF2543 - hypothetical protein, at 214,918 to 215,058 GFF2543 GFF2544 - hypothetical protein, at 215,527 to 216,246 GFF2544 GFF2545 - hypothetical protein, at 216,511 to 217,452 GFF2545 Position (kb) 215 216 217Strain fitness (log2 ratio) -2 -1 0 1 2at 214.843 kb on - strandat 214.958 kb on + strand, within GFF2543at 214.958 kb on + strand, within GFF2543at 214.958 kb on + strand, within GFF2543at 214.958 kb on + strand, within GFF2543at 214.958 kb on + strand, within GFF2543at 214.958 kb on + strand, within GFF2543at 214.959 kb on - strand, within GFF2543at 215.221 kb on + strandat 215.221 kb on + strandat 215.222 kb on - strandat 215.687 kb on - strand, within GFF2544at 215.746 kb on + strand, within GFF2544at 215.776 kb on + strand, within GFF2544at 215.776 kb on + strand, within GFF2544at 215.777 kb on - strand, within GFF2544at 215.777 kb on - strand, within GFF2544at 215.777 kb on - strand, within GFF2544at 215.890 kb on + strand, within GFF2544at 215.890 kb on + strand, within GFF2544at 215.891 kb on - strand, within GFF2544at 215.891 kb on - strand, within GFF2544at 215.990 kb on + strand, within GFF2544at 215.990 kb on + strand, within GFF2544at 216.031 kb on + strand, within GFF2544at 216.032 kb on - strand, within GFF2544at 216.103 kb on + strand, within GFF2544at 216.104 kb on - strand, within GFF2544at 216.104 kb on - strand, within GFF2544at 216.116 kb on - strand, within GFF2544at 216.220 kb on - strandat 216.224 kb on + strandat 216.224 kb on + strandat 216.277 kb on + strandat 216.277 kb on + strandat 216.277 kb on + strandat 216.278 kb on - strandat 216.432 kb on - strandat 216.635 kb on + strand, within GFF2545at 216.635 kb on + strand, within GFF2545at 216.635 kb on + strand, within GFF2545at 216.636 kb on - strand, within GFF2545at 216.636 kb on - strand, within GFF2545at 216.636 kb on - strand, within GFF2545at 216.666 kb on - strand, within GFF2545at 216.666 kb on - strand, within GFF2545at 216.668 kb on + strand, within GFF2545at 216.668 kb on + strand, within GFF2545at 216.669 kb on - strand, within GFF2545at 216.669 kb on - strand, within GFF2545at 216.695 kb on + strand, within GFF2545at 216.696 kb on - strand, within GFF2545at 216.696 kb on - strand, within GFF2545at 216.696 kb on - strand, within GFF2545at 216.728 kb on + strand, within GFF2545at 216.729 kb on - strand, within GFF2545at 216.729 kb on - strand, within GFF2545at 216.729 kb on - strand, within GFF2545at 216.743 kb on + strand, within GFF2545at 216.743 kb on + strand, within GFF2545at 216.743 kb on + strand, within GFF2545at 216.743 kb on + strand, within GFF2545at 216.744 kb on - strand, within GFF2545at 216.792 kb on - strand, within GFF2545at 216.812 kb on + strand, within GFF2545at 216.812 kb on + strand, within GFF2545at 216.812 kb on + strand, within GFF2545at 216.812 kb on + strand, within GFF2545at 216.812 kb on + strand, within GFF2545at 216.812 kb on + strand, within GFF2545at 216.812 kb on + strand, within GFF2545at 216.812 kb on + strand, within GFF2545at 216.813 kb on - strand, within GFF2545at 216.813 kb on - strand, within GFF2545at 216.813 kb on - strand, within GFF2545at 216.813 kb on - strand, within GFF2545at 216.813 kb on - strand, within GFF2545at 216.813 kb on - strand, within GFF2545at 216.875 kb on + strand, within GFF2545at 216.875 kb on + strand, within GFF2545at 216.902 kb on + strand, within GFF2545at 216.903 kb on - strand, within GFF2545at 216.914 kb on + strand, within GFF2545at 216.914 kb on + strand, within GFF2545at 216.915 kb on - strand, within GFF2545at 216.915 kb on - strand, within GFF2545at 216.917 kb on + strand, within GFF2545at 216.956 kb on + strand, within GFF2545at 216.956 kb on + strand, within GFF2545at 216.983 kb on + strand, within GFF2545at 217.044 kb on - strand, within GFF2545at 217.047 kb on - strand, within GFF2545at 217.047 kb on - strand, within GFF2545at 217.049 kb on + strand, within GFF2545at 217.049 kb on + strand, within GFF2545at 217.053 kb on - strand, within GFF2545at 217.106 kb on + strand, within GFF2545at 217.145 kb on + strand, within GFF2545at 217.202 kb on + strand, within GFF2545at 217.203 kb on - strand, within GFF2545at 217.232 kb on + strand, within GFF2545at 217.232 kb on + strand, within GFF2545at 217.232 kb on + strand, within GFF2545at 217.233 kb on - strand, within GFF2545at 217.233 kb on - strand, within GFF2545

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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214,843 - +0.2
214,958 + GFF2543 0.28 +0.0
214,958 + GFF2543 0.28 +1.8
214,958 + GFF2543 0.28 +0.3
214,958 + GFF2543 0.28 -1.3
214,958 + GFF2543 0.28 +0.4
214,958 + GFF2543 0.28 +0.4
214,959 - GFF2543 0.29 -0.5
215,221 + -1.0
215,221 + -0.5
215,222 - -1.6
215,687 - GFF2544 0.22 +0.3
215,746 + GFF2544 0.30 -2.3
215,776 + GFF2544 0.35 -0.1
215,776 + GFF2544 0.35 -0.5
215,777 - GFF2544 0.35 -0.9
215,777 - GFF2544 0.35 +1.2
215,777 - GFF2544 0.35 -1.8
215,890 + GFF2544 0.50 +0.1
215,890 + GFF2544 0.50 +0.8
215,891 - GFF2544 0.51 -0.8
215,891 - GFF2544 0.51 +0.6
215,990 + GFF2544 0.64 +0.5
215,990 + GFF2544 0.64 +0.6
216,031 + GFF2544 0.70 -0.1
216,032 - GFF2544 0.70 -1.2
216,103 + GFF2544 0.80 +0.7
216,104 - GFF2544 0.80 +1.5
216,104 - GFF2544 0.80 +1.0
216,116 - GFF2544 0.82 +1.3
216,220 - +0.1
216,224 + -0.2
216,224 + -1.8
216,277 + -0.8
216,277 + +0.1
216,277 + -0.0
216,278 - +0.6
216,432 - -0.1
216,635 + GFF2545 0.13 -1.6
216,635 + GFF2545 0.13 +1.2
216,635 + GFF2545 0.13 +0.4
216,636 - GFF2545 0.13 +0.2
216,636 - GFF2545 0.13 -0.1
216,636 - GFF2545 0.13 -0.9
216,666 - GFF2545 0.16 +0.1
216,666 - GFF2545 0.16 -0.1
216,668 + GFF2545 0.17 +0.7
216,668 + GFF2545 0.17 -0.2
216,669 - GFF2545 0.17 -1.4
216,669 - GFF2545 0.17 +0.7
216,695 + GFF2545 0.20 -1.4
216,696 - GFF2545 0.20 -2.7
216,696 - GFF2545 0.20 -0.5
216,696 - GFF2545 0.20 -1.2
216,728 + GFF2545 0.23 -0.3
216,729 - GFF2545 0.23 +1.3
216,729 - GFF2545 0.23 +0.3
216,729 - GFF2545 0.23 +0.9
216,743 + GFF2545 0.25 -1.2
216,743 + GFF2545 0.25 -0.8
216,743 + GFF2545 0.25 -0.3
216,743 + GFF2545 0.25 -0.5
216,744 - GFF2545 0.25 -0.9
216,792 - GFF2545 0.30 -0.1
216,812 + GFF2545 0.32 +0.3
216,812 + GFF2545 0.32 +2.3
216,812 + GFF2545 0.32 +0.4
216,812 + GFF2545 0.32 -0.8
216,812 + GFF2545 0.32 -2.2
216,812 + GFF2545 0.32 +0.2
216,812 + GFF2545 0.32 +1.1
216,812 + GFF2545 0.32 -0.5
216,813 - GFF2545 0.32 +0.5
216,813 - GFF2545 0.32 +0.3
216,813 - GFF2545 0.32 +0.1
216,813 - GFF2545 0.32 -0.5
216,813 - GFF2545 0.32 -0.4
216,813 - GFF2545 0.32 +0.4
216,875 + GFF2545 0.39 -0.3
216,875 + GFF2545 0.39 +0.3
216,902 + GFF2545 0.42 -1.0
216,903 - GFF2545 0.42 -0.7
216,914 + GFF2545 0.43 -0.9
216,914 + GFF2545 0.43 -0.3
216,915 - GFF2545 0.43 -0.5
216,915 - GFF2545 0.43 -0.0
216,917 + GFF2545 0.43 +1.2
216,956 + GFF2545 0.47 -0.7
216,956 + GFF2545 0.47 +0.2
216,983 + GFF2545 0.50 -0.9
217,044 - GFF2545 0.57 +1.6
217,047 - GFF2545 0.57 +0.0
217,047 - GFF2545 0.57 +0.4
217,049 + GFF2545 0.57 -0.2
217,049 + GFF2545 0.57 -1.3
217,053 - GFF2545 0.58 -1.3
217,106 + GFF2545 0.63 -0.5
217,145 + GFF2545 0.67 -1.5
217,202 + GFF2545 0.73 -0.6
217,203 - GFF2545 0.73 -1.5
217,232 + GFF2545 0.77 -0.1
217,232 + GFF2545 0.77 -0.9
217,232 + GFF2545 0.77 -0.2
217,233 - GFF2545 0.77 +0.1
217,233 - GFF2545 0.77 -0.5

Or see this region's nucleotide sequence