Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2540 and GFF2541 are separated by 21 nucleotides GFF2541 and GFF2542 are separated by 170 nucleotides GFF2542 and GFF2543 are separated by 120 nucleotides GFF2543 and GFF2544 are separated by 468 nucleotides
GFF2540 - putative protein YisK, at 210,923 to 211,696
GFF2540
GFF2541 - hypothetical protein, at 211,718 to 211,969
GFF2541
GFF2542 - Pyruvate, phosphate dikinase, at 212,140 to 214,797
GFF2542
GFF2543 - hypothetical protein, at 214,918 to 215,058
GFF2543
GFF2544 - hypothetical protein, at 215,527 to 216,246
GFF2544
Position (kb) 212
213
214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 211.164 kb on - strand, within GFF2540 at 211.164 kb on - strand, within GFF2540 at 211.164 kb on - strand, within GFF2540 at 211.164 kb on - strand, within GFF2540 at 211.164 kb on - strand, within GFF2540 at 211.226 kb on + strand, within GFF2540 at 211.226 kb on + strand, within GFF2540 at 211.226 kb on + strand, within GFF2540 at 211.226 kb on + strand, within GFF2540 at 211.227 kb on - strand, within GFF2540 at 211.227 kb on - strand, within GFF2540 at 211.227 kb on - strand, within GFF2540 at 211.244 kb on + strand, within GFF2540 at 211.244 kb on + strand, within GFF2540 at 211.244 kb on + strand, within GFF2540 at 211.244 kb on + strand, within GFF2540 at 211.245 kb on - strand, within GFF2540 at 211.245 kb on - strand, within GFF2540 at 211.245 kb on - strand, within GFF2540 at 211.245 kb on - strand, within GFF2540 at 211.415 kb on + strand, within GFF2540 at 211.415 kb on + strand, within GFF2540 at 211.416 kb on - strand, within GFF2540 at 211.505 kb on + strand, within GFF2540 at 211.506 kb on - strand, within GFF2540 at 211.681 kb on + strand at 211.682 kb on - strand at 211.682 kb on - strand at 211.754 kb on - strand, within GFF2541 at 211.754 kb on - strand, within GFF2541 at 211.754 kb on - strand, within GFF2541 at 211.754 kb on - strand, within GFF2541 at 211.782 kb on + strand, within GFF2541 at 211.985 kb on + strand at 211.985 kb on + strand at 211.986 kb on - strand at 211.986 kb on - strand at 212.021 kb on + strand at 212.021 kb on + strand at 212.022 kb on - strand at 212.022 kb on - strand at 214.843 kb on - strand at 214.958 kb on + strand, within GFF2543 at 214.958 kb on + strand, within GFF2543 at 214.958 kb on + strand, within GFF2543 at 214.958 kb on + strand, within GFF2543 at 214.958 kb on + strand, within GFF2543 at 214.958 kb on + strand, within GFF2543 at 214.959 kb on - strand, within GFF2543 at 215.221 kb on + strand at 215.221 kb on + strand at 215.222 kb on - strand at 215.687 kb on - strand, within GFF2544 at 215.746 kb on + strand, within GFF2544 at 215.776 kb on + strand, within GFF2544 at 215.776 kb on + strand, within GFF2544 at 215.777 kb on - strand, within GFF2544 at 215.777 kb on - strand, within GFF2544 at 215.777 kb on - strand, within GFF2544
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 211,164 - GFF2540 0.31 -1.8 211,164 - GFF2540 0.31 -0.3 211,164 - GFF2540 0.31 +0.4 211,164 - GFF2540 0.31 +1.2 211,164 - GFF2540 0.31 -0.0 211,226 + GFF2540 0.39 +0.6 211,226 + GFF2540 0.39 +0.4 211,226 + GFF2540 0.39 +0.0 211,226 + GFF2540 0.39 +0.1 211,227 - GFF2540 0.39 -0.1 211,227 - GFF2540 0.39 +0.2 211,227 - GFF2540 0.39 +1.0 211,244 + GFF2540 0.41 -0.1 211,244 + GFF2540 0.41 -0.3 211,244 + GFF2540 0.41 +0.4 211,244 + GFF2540 0.41 +1.2 211,245 - GFF2540 0.42 -0.1 211,245 - GFF2540 0.42 +1.3 211,245 - GFF2540 0.42 +0.6 211,245 - GFF2540 0.42 -1.4 211,415 + GFF2540 0.64 -0.7 211,415 + GFF2540 0.64 +1.0 211,416 - GFF2540 0.64 -1.1 211,505 + GFF2540 0.75 +1.5 211,506 - GFF2540 0.75 +0.6 211,681 + -1.0 211,682 - +0.3 211,682 - +0.8 211,754 - GFF2541 0.14 -0.3 211,754 - GFF2541 0.14 +0.1 211,754 - GFF2541 0.14 -0.0 211,754 - GFF2541 0.14 -0.1 211,782 + GFF2541 0.25 -0.0 211,985 + +0.6 211,985 + -0.0 211,986 - -0.9 211,986 - -0.0 212,021 + +0.7 212,021 + -0.2 212,022 - -0.5 212,022 - -0.7 214,843 - +0.2 214,958 + GFF2543 0.28 +0.0 214,958 + GFF2543 0.28 +1.8 214,958 + GFF2543 0.28 +0.3 214,958 + GFF2543 0.28 -1.3 214,958 + GFF2543 0.28 +0.4 214,958 + GFF2543 0.28 +0.4 214,959 - GFF2543 0.29 -0.5 215,221 + -1.0 215,221 + -0.5 215,222 - -1.6 215,687 - GFF2544 0.22 +0.3 215,746 + GFF2544 0.30 -2.3 215,776 + GFF2544 0.35 -0.1 215,776 + GFF2544 0.35 -0.5 215,777 - GFF2544 0.35 -0.9 215,777 - GFF2544 0.35 +1.2 215,777 - GFF2544 0.35 -1.8
Or see this region's nucleotide sequence