Strain Fitness in Xanthobacter sp. DMC5 around GFF2540

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2539 and GFF2540 are separated by 214 nucleotidesGFF2540 and GFF2541 are separated by 21 nucleotidesGFF2541 and GFF2542 are separated by 170 nucleotides GFF2539 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 209,824 to 210,708 GFF2539 GFF2540 - putative protein YisK, at 210,923 to 211,696 GFF2540 GFF2541 - hypothetical protein, at 211,718 to 211,969 GFF2541 GFF2542 - Pyruvate, phosphate dikinase, at 212,140 to 214,797 GFF2542 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1at 210.037 kb on + strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.037 kb on + strand, within GFF2539at 210.038 kb on - strand, within GFF2539at 210.038 kb on - strand, within GFF2539at 210.038 kb on - strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.298 kb on + strand, within GFF2539at 210.865 kb on + strandat 210.866 kb on - strandat 210.866 kb on - strandat 210.866 kb on - strandat 211.164 kb on - strand, within GFF2540at 211.164 kb on - strand, within GFF2540at 211.164 kb on - strand, within GFF2540at 211.164 kb on - strand, within GFF2540at 211.164 kb on - strand, within GFF2540at 211.226 kb on + strand, within GFF2540at 211.226 kb on + strand, within GFF2540at 211.226 kb on + strand, within GFF2540at 211.226 kb on + strand, within GFF2540at 211.227 kb on - strand, within GFF2540at 211.227 kb on - strand, within GFF2540at 211.227 kb on - strand, within GFF2540at 211.244 kb on + strand, within GFF2540at 211.244 kb on + strand, within GFF2540at 211.244 kb on + strand, within GFF2540at 211.244 kb on + strand, within GFF2540at 211.245 kb on - strand, within GFF2540at 211.245 kb on - strand, within GFF2540at 211.245 kb on - strand, within GFF2540at 211.245 kb on - strand, within GFF2540at 211.415 kb on + strand, within GFF2540at 211.415 kb on + strand, within GFF2540at 211.416 kb on - strand, within GFF2540at 211.505 kb on + strand, within GFF2540at 211.506 kb on - strand, within GFF2540at 211.681 kb on + strandat 211.682 kb on - strandat 211.682 kb on - strandat 211.754 kb on - strand, within GFF2541at 211.754 kb on - strand, within GFF2541at 211.754 kb on - strand, within GFF2541at 211.754 kb on - strand, within GFF2541at 211.782 kb on + strand, within GFF2541at 211.985 kb on + strandat 211.985 kb on + strandat 211.986 kb on - strandat 211.986 kb on - strandat 212.021 kb on + strandat 212.021 kb on + strandat 212.022 kb on - strandat 212.022 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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210,037 + GFF2539 0.24 +1.0
210,037 + GFF2539 0.24 +0.2
210,037 + GFF2539 0.24 +0.1
210,037 + GFF2539 0.24 -0.1
210,037 + GFF2539 0.24 +0.2
210,038 - GFF2539 0.24 +0.0
210,038 - GFF2539 0.24 -0.3
210,038 - GFF2539 0.24 +1.6
210,298 + GFF2539 0.54 +0.4
210,298 + GFF2539 0.54 -1.3
210,298 + GFF2539 0.54 +0.1
210,298 + GFF2539 0.54 -0.2
210,298 + GFF2539 0.54 -0.4
210,298 + GFF2539 0.54 +0.4
210,865 + -0.4
210,866 - +1.6
210,866 - +0.0
210,866 - +0.1
211,164 - GFF2540 0.31 -1.8
211,164 - GFF2540 0.31 -0.3
211,164 - GFF2540 0.31 +0.4
211,164 - GFF2540 0.31 +1.2
211,164 - GFF2540 0.31 -0.0
211,226 + GFF2540 0.39 +0.6
211,226 + GFF2540 0.39 +0.4
211,226 + GFF2540 0.39 +0.0
211,226 + GFF2540 0.39 +0.1
211,227 - GFF2540 0.39 -0.1
211,227 - GFF2540 0.39 +0.2
211,227 - GFF2540 0.39 +1.0
211,244 + GFF2540 0.41 -0.1
211,244 + GFF2540 0.41 -0.3
211,244 + GFF2540 0.41 +0.4
211,244 + GFF2540 0.41 +1.2
211,245 - GFF2540 0.42 -0.1
211,245 - GFF2540 0.42 +1.3
211,245 - GFF2540 0.42 +0.6
211,245 - GFF2540 0.42 -1.4
211,415 + GFF2540 0.64 -0.7
211,415 + GFF2540 0.64 +1.0
211,416 - GFF2540 0.64 -1.1
211,505 + GFF2540 0.75 +1.5
211,506 - GFF2540 0.75 +0.6
211,681 + -1.0
211,682 - +0.3
211,682 - +0.8
211,754 - GFF2541 0.14 -0.3
211,754 - GFF2541 0.14 +0.1
211,754 - GFF2541 0.14 -0.0
211,754 - GFF2541 0.14 -0.1
211,782 + GFF2541 0.25 -0.0
211,985 + +0.6
211,985 + -0.0
211,986 - -0.9
211,986 - -0.0
212,021 + +0.7
212,021 + -0.2
212,022 - -0.5
212,022 - -0.7

Or see this region's nucleotide sequence