Strain Fitness in Xanthobacter sp. DMC5 around GFF2535

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2534 and GFF2535 are separated by 144 nucleotidesGFF2535 and GFF2536 are separated by 84 nucleotidesGFF2536 and GFF2537 are separated by 130 nucleotides GFF2534 - Oxalyl-CoA decarboxylase, at 203,058 to 204,818 GFF2534 GFF2535 - Formyl-CoA:oxalate CoA-transferase, at 204,963 to 206,240 GFF2535 GFF2536 - Sensor protein FixL, at 206,325 to 206,768 GFF2536 GFF2537 - Formyl-CoA:oxalate CoA-transferase, at 206,899 to 208,152 GFF2537 Position (kb) 204 205 206 207Strain fitness (log2 ratio) -2 -1 0 1at 204.345 kb on + strand, within GFF2534at 204.345 kb on + strand, within GFF2534at 204.345 kb on + strand, within GFF2534at 204.345 kb on + strand, within GFF2534at 204.345 kb on + strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.346 kb on - strand, within GFF2534at 204.552 kb on + strand, within GFF2534at 204.552 kb on + strand, within GFF2534at 204.553 kb on - strand, within GFF2534at 204.553 kb on - strand, within GFF2534at 204.622 kb on - strand, within GFF2534at 204.622 kb on - strand, within GFF2534at 204.684 kb on + strandat 204.742 kb on + strandat 204.905 kb on + strandat 204.906 kb on - strandat 204.916 kb on + strandat 204.948 kb on - strandat 204.959 kb on + strandat 204.959 kb on + strandat 204.959 kb on + strandat 204.960 kb on - strandat 204.960 kb on - strandat 204.960 kb on - strandat 204.960 kb on - strandat 204.977 kb on - strandat 204.977 kb on - strandat 204.977 kb on - strandat 205.138 kb on - strand, within GFF2535at 205.138 kb on - strand, within GFF2535at 205.138 kb on - strand, within GFF2535at 205.138 kb on - strand, within GFF2535at 205.138 kb on - strand, within GFF2535at 205.374 kb on + strand, within GFF2535at 205.374 kb on + strand, within GFF2535at 205.374 kb on + strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.375 kb on - strand, within GFF2535at 205.635 kb on + strand, within GFF2535at 205.635 kb on + strand, within GFF2535at 205.636 kb on - strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.758 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.764 kb on + strand, within GFF2535at 205.765 kb on - strand, within GFF2535at 205.765 kb on - strand, within GFF2535at 205.765 kb on - strand, within GFF2535at 205.765 kb on - strand, within GFF2535at 205.935 kb on + strand, within GFF2535at 205.950 kb on + strand, within GFF2535at 205.950 kb on + strand, within GFF2535at 205.951 kb on - strand, within GFF2535at 205.951 kb on - strand, within GFF2535at 205.951 kb on - strand, within GFF2535at 206.010 kb on + strand, within GFF2535at 206.010 kb on + strand, within GFF2535at 206.011 kb on - strand, within GFF2535at 206.011 kb on - strand, within GFF2535at 206.058 kb on + strand, within GFF2535at 206.058 kb on + strand, within GFF2535at 206.058 kb on + strand, within GFF2535at 206.058 kb on + strand, within GFF2535at 206.058 kb on + strand, within GFF2535at 206.059 kb on - strand, within GFF2535at 206.238 kb on + strandat 206.238 kb on + strandat 206.330 kb on + strandat 206.331 kb on - strandat 206.380 kb on - strand, within GFF2536at 206.521 kb on - strand, within GFF2536at 206.611 kb on + strand, within GFF2536at 206.767 kb on - strandat 206.767 kb on - strandat 206.767 kb on - strandat 206.767 kb on - strandat 207.076 kb on + strand, within GFF2537at 207.076 kb on + strand, within GFF2537

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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204,345 + GFF2534 0.73 +1.3
204,345 + GFF2534 0.73 -0.7
204,345 + GFF2534 0.73 -0.1
204,345 + GFF2534 0.73 +0.3
204,345 + GFF2534 0.73 +0.2
204,346 - GFF2534 0.73 +0.3
204,346 - GFF2534 0.73 -0.1
204,346 - GFF2534 0.73 -0.8
204,346 - GFF2534 0.73 +0.2
204,346 - GFF2534 0.73 +0.1
204,346 - GFF2534 0.73 -0.5
204,346 - GFF2534 0.73 +0.2
204,552 + GFF2534 0.85 +0.7
204,552 + GFF2534 0.85 -0.5
204,553 - GFF2534 0.85 -0.8
204,553 - GFF2534 0.85 -2.7
204,622 - GFF2534 0.89 +0.0
204,622 - GFF2534 0.89 -0.8
204,684 + -0.7
204,742 + -2.4
204,905 + -0.8
204,906 - -0.3
204,916 + -0.7
204,948 - -0.8
204,959 + +0.3
204,959 + -0.3
204,959 + +0.2
204,960 - +0.6
204,960 - -0.3
204,960 - -1.4
204,960 - -0.7
204,977 - -0.3
204,977 - +0.0
204,977 - -0.9
205,138 - GFF2535 0.14 -1.7
205,138 - GFF2535 0.14 +0.1
205,138 - GFF2535 0.14 +0.5
205,138 - GFF2535 0.14 -0.3
205,138 - GFF2535 0.14 -0.3
205,374 + GFF2535 0.32 -2.5
205,374 + GFF2535 0.32 +1.3
205,374 + GFF2535 0.32 +0.2
205,375 - GFF2535 0.32 +0.9
205,375 - GFF2535 0.32 -1.4
205,375 - GFF2535 0.32 +0.0
205,375 - GFF2535 0.32 -0.6
205,375 - GFF2535 0.32 -0.7
205,635 + GFF2535 0.53 +0.2
205,635 + GFF2535 0.53 -0.6
205,636 - GFF2535 0.53 -0.9
205,758 + GFF2535 0.62 -0.7
205,758 + GFF2535 0.62 +0.1
205,758 + GFF2535 0.62 +0.0
205,758 + GFF2535 0.62 +1.0
205,758 + GFF2535 0.62 +0.0
205,764 + GFF2535 0.63 -0.8
205,764 + GFF2535 0.63 +0.7
205,764 + GFF2535 0.63 -0.2
205,764 + GFF2535 0.63 -0.1
205,764 + GFF2535 0.63 -0.6
205,764 + GFF2535 0.63 -1.1
205,764 + GFF2535 0.63 -0.4
205,764 + GFF2535 0.63 +0.3
205,764 + GFF2535 0.63 -0.6
205,764 + GFF2535 0.63 -0.7
205,765 - GFF2535 0.63 -0.3
205,765 - GFF2535 0.63 +1.0
205,765 - GFF2535 0.63 +0.9
205,765 - GFF2535 0.63 -2.1
205,935 + GFF2535 0.76 +0.6
205,950 + GFF2535 0.77 -0.8
205,950 + GFF2535 0.77 +0.7
205,951 - GFF2535 0.77 -1.0
205,951 - GFF2535 0.77 -0.6
205,951 - GFF2535 0.77 -0.1
206,010 + GFF2535 0.82 -0.4
206,010 + GFF2535 0.82 +0.0
206,011 - GFF2535 0.82 +0.3
206,011 - GFF2535 0.82 -0.5
206,058 + GFF2535 0.86 +1.2
206,058 + GFF2535 0.86 -0.9
206,058 + GFF2535 0.86 -0.8
206,058 + GFF2535 0.86 +0.7
206,058 + GFF2535 0.86 -0.0
206,059 - GFF2535 0.86 -0.2
206,238 + +1.0
206,238 + +0.0
206,330 + +0.7
206,331 - -0.3
206,380 - GFF2536 0.12 -0.5
206,521 - GFF2536 0.44 +0.3
206,611 + GFF2536 0.64 +0.0
206,767 - +0.4
206,767 - +0.3
206,767 - +0.0
206,767 - +0.5
207,076 + GFF2537 0.14 -0.8
207,076 + GFF2537 0.14 +0.7

Or see this region's nucleotide sequence