Strain Fitness in Xanthobacter sp. DMC5 around GFF2502

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2500 and GFF2501 are separated by 110 nucleotidesGFF2501 and GFF2502 are separated by 63 nucleotidesGFF2502 and GFF2503 are separated by 179 nucleotidesGFF2503 and GFF2504 are separated by 254 nucleotides GFF2500 - ATP synthase subunit b, at 160,870 to 161,589 GFF2500 GFF2501 - ATP synthase subunit c, at 161,700 to 161,927 GFF2501 GFF2502 - ATP synthase subunit a, at 161,991 to 162,743 GFF2502 GFF2503 - hypothetical protein, at 162,923 to 163,306 GFF2503 GFF2504 - Chromosome partition protein Smc, at 163,561 to 167,013 GFF2504 Position (kb) 161 162 163Strain fitness (log2 ratio) -1 0 1at 161.961 kb on - strandat 163.011 kb on - strand, within GFF2503at 163.289 kb on - strandat 163.369 kb on - strandat 163.562 kb on + strandat 163.563 kb on - strandat 163.563 kb on - strandat 163.563 kb on - strandat 163.563 kb on - strandat 163.563 kb on - strandat 163.563 kb on - strandat 163.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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161,961 - +0.1
163,011 - GFF2503 0.23 -0.1
163,289 - -0.3
163,369 - +0.7
163,562 + -1.4
163,563 - -0.7
163,563 - +0.4
163,563 - -0.2
163,563 - -0.4
163,563 - -0.0
163,563 - +0.1
163,565 - +1.7

Or see this region's nucleotide sequence