Strain Fitness in Xanthobacter sp. DMC5 around GFF2500

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2498 and GFF2499 are separated by 292 nucleotidesGFF2499 and GFF2500 are separated by 147 nucleotidesGFF2500 and GFF2501 are separated by 110 nucleotidesGFF2501 and GFF2502 are separated by 63 nucleotides GFF2498 - hypothetical protein, at 158,727 to 159,938 GFF2498 GFF2499 - ATP synthase subunit b, at 160,231 to 160,722 GFF2499 GFF2500 - ATP synthase subunit b, at 160,870 to 161,589 GFF2500 GFF2501 - ATP synthase subunit c, at 161,700 to 161,927 GFF2501 GFF2502 - ATP synthase subunit a, at 161,991 to 162,743 GFF2502 Position (kb) 160 161 162Strain fitness (log2 ratio) -1 0 1at 159.999 kb on - strandat 159.999 kb on - strandat 159.999 kb on - strandat 159.999 kb on - strandat 159.999 kb on - strandat 160.001 kb on - strandat 160.004 kb on - strandat 161.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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159,999 - +0.4
159,999 - +0.4
159,999 - -1.0
159,999 - -0.4
159,999 - +0.7
160,001 - -0.4
160,004 - -0.1
161,961 - +0.1

Or see this region's nucleotide sequence