Strain Fitness in Xanthobacter sp. DMC5 around GFF249

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF248 and GFF249 are separated by 80 nucleotidesGFF249 and GFF250 are separated by 233 nucleotidesGFF250 and GFF251 are separated by 188 nucleotides GFF248 - Acetone carboxylase beta subunit, at 259,540 to 261,693 GFF248 GFF249 - Acetone carboxylase alpha subunit, at 261,774 to 264,104 GFF249 GFF250 - Acetone carboxylase gamma subunit, at 264,338 to 264,844 GFF250 GFF251 - Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 265,033 to 265,896 GFF251 Position (kb) 261 262 263 264 265Strain fitness (log2 ratio) -2 -1 0 1at 260.890 kb on + strand, within GFF248at 260.921 kb on - strand, within GFF248at 260.921 kb on - strand, within GFF248at 260.950 kb on + strand, within GFF248at 260.950 kb on + strand, within GFF248at 260.950 kb on + strand, within GFF248at 260.951 kb on - strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.978 kb on - strand, within GFF248at 260.978 kb on - strand, within GFF248at 260.978 kb on - strand, within GFF248at 260.983 kb on + strand, within GFF248at 261.074 kb on - strand, within GFF248at 261.080 kb on - strand, within GFF248at 261.080 kb on - strand, within GFF248at 261.080 kb on - strand, within GFF248at 261.212 kb on - strand, within GFF248at 261.256 kb on + strand, within GFF248at 261.355 kb on + strand, within GFF248at 261.355 kb on + strand, within GFF248at 261.355 kb on + strand, within GFF248at 261.356 kb on - strand, within GFF248at 261.356 kb on - strand, within GFF248at 261.356 kb on - strand, within GFF248at 261.367 kb on + strand, within GFF248at 261.367 kb on + strand, within GFF248at 261.367 kb on + strand, within GFF248at 261.400 kb on + strand, within GFF248at 261.400 kb on + strand, within GFF248at 261.401 kb on - strand, within GFF248at 261.553 kb on + strandat 261.553 kb on + strandat 261.554 kb on - strandat 261.675 kb on - strandat 261.812 kb on + strandat 261.813 kb on - strandat 261.895 kb on - strandat 261.943 kb on - strandat 261.943 kb on - strandat 262.057 kb on - strand, within GFF249at 262.135 kb on - strand, within GFF249at 262.135 kb on - strand, within GFF249at 262.135 kb on - strand, within GFF249at 262.135 kb on - strand, within GFF249at 262.135 kb on - strand, within GFF249at 262.215 kb on - strand, within GFF249at 262.308 kb on - strand, within GFF249at 262.369 kb on - strand, within GFF249at 262.458 kb on + strand, within GFF249at 262.551 kb on + strand, within GFF249at 262.551 kb on + strand, within GFF249at 262.566 kb on + strand, within GFF249at 262.567 kb on - strand, within GFF249at 262.635 kb on + strand, within GFF249at 262.636 kb on - strand, within GFF249at 262.806 kb on + strand, within GFF249at 262.807 kb on - strand, within GFF249at 262.807 kb on - strand, within GFF249at 262.807 kb on - strand, within GFF249at 262.807 kb on - strand, within GFF249at 262.969 kb on - strand, within GFF249at 263.112 kb on + strand, within GFF249at 263.113 kb on - strand, within GFF249at 263.113 kb on - strand, within GFF249at 263.113 kb on - strand, within GFF249at 263.268 kb on + strand, within GFF249at 263.268 kb on + strand, within GFF249at 263.269 kb on - strand, within GFF249at 263.269 kb on - strand, within GFF249at 263.313 kb on + strand, within GFF249at 263.314 kb on - strand, within GFF249at 263.616 kb on + strand, within GFF249at 263.616 kb on + strand, within GFF249at 263.617 kb on - strand, within GFF249at 263.626 kb on - strand, within GFF249at 263.634 kb on + strand, within GFF249at 263.634 kb on + strand, within GFF249at 263.634 kb on + strand, within GFF249at 263.634 kb on + strand, within GFF249at 263.634 kb on + strand, within GFF249at 263.635 kb on - strand, within GFF249at 263.635 kb on - strand, within GFF249at 263.635 kb on - strand, within GFF249at 263.742 kb on + strand, within GFF249at 263.743 kb on - strand, within GFF249at 264.033 kb on + strandat 264.033 kb on + strandat 264.033 kb on + strandat 264.033 kb on + strandat 264.033 kb on + strandat 264.033 kb on + strandat 264.033 kb on + strandat 264.034 kb on - strandat 264.046 kb on - strandat 264.112 kb on + strandat 264.112 kb on + strandat 264.112 kb on + strandat 264.113 kb on - strandat 264.268 kb on - strandat 264.268 kb on - strandat 264.268 kb on - strandat 264.344 kb on + strandat 264.344 kb on + strandat 264.344 kb on + strandat 264.344 kb on + strandat 264.344 kb on + strandat 264.345 kb on - strandat 264.345 kb on - strandat 264.345 kb on - strandat 264.345 kb on - strandat 264.345 kb on - strandat 264.345 kb on - strandat 264.446 kb on + strand, within GFF250at 264.446 kb on + strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.447 kb on - strand, within GFF250at 264.653 kb on + strand, within GFF250at 264.701 kb on + strand, within GFF250at 264.701 kb on + strand, within GFF250at 264.902 kb on + strandat 265.054 kb on - strandat 265.054 kb on - strandat 265.054 kb on - strandat 265.054 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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260,890 + GFF248 0.63 -0.1
260,921 - GFF248 0.64 -0.8
260,921 - GFF248 0.64 +0.5
260,950 + GFF248 0.65 -1.2
260,950 + GFF248 0.65 -0.3
260,950 + GFF248 0.65 -0.6
260,951 - GFF248 0.66 +0.7
260,977 + GFF248 0.67 +1.1
260,977 + GFF248 0.67 +0.2
260,977 + GFF248 0.67 -0.4
260,977 + GFF248 0.67 -1.6
260,977 + GFF248 0.67 +0.1
260,977 + GFF248 0.67 -0.2
260,977 + GFF248 0.67 +1.3
260,978 - GFF248 0.67 -1.0
260,978 - GFF248 0.67 -1.0
260,978 - GFF248 0.67 -0.3
260,983 + GFF248 0.67 +1.0
261,074 - GFF248 0.71 -0.8
261,080 - GFF248 0.71 -1.4
261,080 - GFF248 0.71 +0.3
261,080 - GFF248 0.71 -1.7
261,212 - GFF248 0.78 -0.4
261,256 + GFF248 0.80 -1.7
261,355 + GFF248 0.84 -0.5
261,355 + GFF248 0.84 +0.2
261,355 + GFF248 0.84 -0.6
261,356 - GFF248 0.84 -0.2
261,356 - GFF248 0.84 +0.7
261,356 - GFF248 0.84 +0.6
261,367 + GFF248 0.85 -1.5
261,367 + GFF248 0.85 +0.2
261,367 + GFF248 0.85 -0.2
261,400 + GFF248 0.86 -1.3
261,400 + GFF248 0.86 +0.4
261,401 - GFF248 0.86 +0.6
261,553 + -0.0
261,553 + -1.2
261,554 - +1.2
261,675 - +0.4
261,812 + -0.1
261,813 - -0.3
261,895 - -0.7
261,943 - +0.5
261,943 - -1.1
262,057 - GFF249 0.12 -0.5
262,135 - GFF249 0.15 -0.1
262,135 - GFF249 0.15 -0.7
262,135 - GFF249 0.15 +0.1
262,135 - GFF249 0.15 +0.4
262,135 - GFF249 0.15 -0.2
262,215 - GFF249 0.19 +0.2
262,308 - GFF249 0.23 +0.0
262,369 - GFF249 0.26 -0.3
262,458 + GFF249 0.29 -1.2
262,551 + GFF249 0.33 -0.3
262,551 + GFF249 0.33 -0.3
262,566 + GFF249 0.34 -0.8
262,567 - GFF249 0.34 -0.4
262,635 + GFF249 0.37 -0.2
262,636 - GFF249 0.37 +0.8
262,806 + GFF249 0.44 +0.2
262,807 - GFF249 0.44 +0.5
262,807 - GFF249 0.44 +1.2
262,807 - GFF249 0.44 -0.9
262,807 - GFF249 0.44 -0.6
262,969 - GFF249 0.51 +0.2
263,112 + GFF249 0.57 -0.8
263,113 - GFF249 0.57 -0.4
263,113 - GFF249 0.57 +0.2
263,113 - GFF249 0.57 +0.1
263,268 + GFF249 0.64 +0.2
263,268 + GFF249 0.64 +1.4
263,269 - GFF249 0.64 +0.1
263,269 - GFF249 0.64 -0.4
263,313 + GFF249 0.66 +0.2
263,314 - GFF249 0.66 +0.3
263,616 + GFF249 0.79 -0.1
263,616 + GFF249 0.79 -0.7
263,617 - GFF249 0.79 +1.2
263,626 - GFF249 0.79 +0.3
263,634 + GFF249 0.80 +0.2
263,634 + GFF249 0.80 -1.5
263,634 + GFF249 0.80 +1.0
263,634 + GFF249 0.80 -1.5
263,634 + GFF249 0.80 +0.6
263,635 - GFF249 0.80 -0.1
263,635 - GFF249 0.80 +0.1
263,635 - GFF249 0.80 -1.1
263,742 + GFF249 0.84 -0.2
263,743 - GFF249 0.84 -0.0
264,033 + -0.5
264,033 + -0.8
264,033 + +0.2
264,033 + +1.0
264,033 + -0.4
264,033 + -0.2
264,033 + -0.7
264,034 - -1.1
264,046 - -0.8
264,112 + -0.1
264,112 + +1.0
264,112 + -1.2
264,113 - -0.5
264,268 - -0.1
264,268 - +0.9
264,268 - -0.8
264,344 + +0.8
264,344 + -0.8
264,344 + +0.4
264,344 + -0.2
264,344 + +1.1
264,345 - -0.3
264,345 - -1.0
264,345 - +0.1
264,345 - -0.6
264,345 - -0.0
264,345 - -0.4
264,446 + GFF250 0.21 +0.9
264,446 + GFF250 0.21 -1.2
264,447 - GFF250 0.21 +1.0
264,447 - GFF250 0.21 -1.8
264,447 - GFF250 0.21 -0.1
264,447 - GFF250 0.21 -1.2
264,447 - GFF250 0.21 +0.3
264,447 - GFF250 0.21 +0.3
264,447 - GFF250 0.21 -0.2
264,653 + GFF250 0.62 -1.7
264,701 + GFF250 0.72 +0.9
264,701 + GFF250 0.72 -1.6
264,902 + -0.6
265,054 - +0.4
265,054 - -0.8
265,054 - -0.6
265,054 - +0.0

Or see this region's nucleotide sequence