Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2488 and GFF2489 are separated by 3 nucleotides GFF2489 and GFF2490 are separated by 10 nucleotides GFF2490 and GFF2491 are separated by 318 nucleotides
GFF2488 - Succinate dehydrogenase flavoprotein subunit, at 149,423 to 151,258
GFF2488
GFF2489 - hypothetical protein, at 151,262 to 151,678
GFF2489
GFF2490 - Succinate dehydrogenase cytochrome b556 subunit, at 151,689 to 152,087
GFF2490
GFF2491 - Outer membrane protein W, at 152,406 to 153,092
GFF2491
Position (kb) 151
152 Strain fitness (log2 ratio) -1
0
1 at 152.172 kb on - strand at 152.182 kb on - strand at 152.182 kb on - strand at 152.212 kb on + strand at 152.213 kb on - strand at 152.226 kb on + strand at 152.291 kb on - strand at 152.324 kb on + strand at 152.470 kb on + strand at 152.470 kb on + strand at 152.657 kb on - strand, within GFF2491 at 152.676 kb on - strand, within GFF2491 at 152.677 kb on + strand, within GFF2491 at 152.677 kb on + strand, within GFF2491 at 152.677 kb on + strand, within GFF2491 at 152.677 kb on + strand, within GFF2491 at 152.678 kb on - strand, within GFF2491
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 152,172 - -0.7 152,182 - -1.2 152,182 - -1.1 152,212 + -1.2 152,213 - -0.9 152,226 + -1.3 152,291 - -0.0 152,324 + -1.1 152,470 + -1.7 152,470 + -0.7 152,657 - GFF2491 0.37 -0.8 152,676 - GFF2491 0.39 -1.1 152,677 + GFF2491 0.39 +1.1 152,677 + GFF2491 0.39 +0.2 152,677 + GFF2491 0.39 -0.4 152,677 + GFF2491 0.39 -0.3 152,678 - GFF2491 0.40 +1.2
Or see this region's nucleotide sequence